HsaINT0105972 @ hg19
Intron Retention
Gene
ENSG00000143033 | MTF2
Description
metal response element binding transcription factor 2 [Source:HGNC Symbol;Acc:29535]
Coordinates
chr1:93599485-93599752:+
Coord C1 exon
chr1:93599485-93599537
Coord A exon
chr1:93599538-93599647
Coord C2 exon
chr1:93599648-93599752
Length
110 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
3' ss Seq
TTTAAATTCTTTTGTCTCAGGAG
3' ss Score
7.24
Exon sequences
Seq C1 exon
GATAAGGAATCAATTTCAGAGAATCCTACTTTGGATTTACCTTGTTCTATAGG
Seq A exon
GTAAATAGAAAGTTATTTTCTCCCTTTCTAGGTTTTGTCTTTTGAGTAGATATTAATATTTGTTTGTTATATAATATAGTCGTTACACAATTTAAATTCTTTTGTCTCAG
Seq C2 exon
GAGAACTGAGGGAACTGCACATTCATCCAATACCTCAGATGTGGATTTCACGGGTGCTTCCAGTGCAAAAGAAACTACCTCGTCTAGCATTTCCAGGCATTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143033-MTF2:NM_001164392:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATCAATTTCAGAGAATCCTACT
R:
CCATAATGCCTGGAAATGCTAGAC
Band lengths:
154-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)