RnoINT0095100 @ rn6
Intron Retention
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2661417-2661680:-
Coord C1 exon
chr14:2661628-2661680
Coord A exon
chr14:2661522-2661627
Coord C2 exon
chr14:2661417-2661521
Length
106 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
3' ss Seq
TTCAAATTCTTTTGTCTCAGGAG
3' ss Score
6.77
Exon sequences
Seq C1 exon
GGTAAGGAATCAGTTTCAGAGAATCCTGCGTTGGATTTACCTTGTTCTATAGG
Seq A exon
GTAAATAGTTATTTTTTTCTTTCCTAGGAGTTTTCTTTGTAAAGGAATTAGTATTTCTATTGTTATGTAATATAGTTGTTATACCATTCAAATTCTTTTGTCTCAG
Seq C2 exon
GAGAACTGAGGGAGTTGCACATTCATCCAATACCTCAGATGTGGACCTCACGGGTGCTTCCAGTGCAAAAGAAACTACCTCGTCTAGCATTCCCAGGCATTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075:ENSRNOT00000000086:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATCAGTTTCAGAGAATCCTGC
R:
CCATAATGCCTGGGAATGCTAGA
Band lengths:
154-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]