DreINT0099051 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8297378-8307702:+
Coord C1 exon
chr25:8297378-8307349
Coord A exon
chr25:8307350-8307511
Coord C2 exon
chr25:8307512-8307702
Length
162 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTTTTTATTCTAATTATAGGGT
3' ss Score
7.89
Exon sequences
Seq C1 exon
GTTGTTTTCTTCAGTGCCCTTCTGAGAGACCGTATCTCCGGGAGGAGACCATGAAGTGTGTCACAGAGGAAGGATGCAAAGACTGTTTCTATGATGGGAAGGTATATCCACGCGGATCCGTCATTTACAACACCACAGATGGGAGTGGTGCATGTTTTTCTGCTAAATGTGATTACAATGGAGAAATAATCCGAGAGATAAAAACTGATTGTATAATCACAACAACACCTTTCACATTTTCAACACCACCATCTACAACAGTTACTATAACATCAACGGAAACACCATCCACAATCACATCCACTATTACACCAACTACTGGAACTTCAACACCAACTTCTACAGAAACACCAATCACAACAACATCCATTACTTCACCAACGACTGAAACATCTACATCAACTTCTACAGAAACACCACCCACACCAGCATCCACTACTTCACCAACTACTGAAACATCAACATCTACTTCAACAGAGACACCATCCACAATCACATCCACTGTTACACCAACTACTGAAACATCAACACCTACATCAACAGAAACAGTACCTACACCTAGTACAACTACTGCTACAACAACACCTACCAGTACAACAACTCCAATCTGTGTCCCTAGATGTGAATGGTCAGATTGGATTGATAGCAACAAACCCAATACAGAGCCAGAAGGATTTGAGACTGAGTCCATCCCCTTATTATGGAACTCAAGGAGGATAACTTGTCAGAGTCCTGAAGAGGTTGAATGTAGAGCAGTGAATTATCCCCAAAAGACGCTGGAAGACTTGGGACAAACAGTTTATTGCAATACATCATTTGGACTGTCATGTTCTAATGAAGACAATGCAGAGGGCTTGCCACCAATTTGTTATAATTATGAAATACGTGTATACTGTTGTAAAGAAAACTGCCCTTCAGATACAACCACAAGTACACCATCTACATCAACAGAAACACCATCCACAACTACATCCACTACTTCACCAACTACTGAAACATCAACCCCTACTTCAACAGAAACACCATCCACAATCACATCTACTGTTACACCAACTACTGGAACTTCAACACCAACTTCTACAGAAACACCACCCACACCAGCATCCACTACTTCACCAACTACTGAAACATCAACACCTACTTCAACAGAGACACCATCCACAACAGCATCCACTACTTCACCAACAACTGAAACATCAACGCCTACTTCAACAGAGACACCATCCACAATCACATCCACTGTTACACCAACTACTGAAACATCAACACCTACATCAACAGAAACAGTACCTACACCTAGTACAACTACTGCTACAACACCTACCAGTACAACAACTCCAATCTGTGTCCCTAGATGTGAATGGTCAGATTGGATTGATAGCAACAAACCCAATACAGAGCCAGAAGGATTTGAGACTGAATCCATCCCCTTATTATGGAACTCAAAGAGGATAACTTGTCAGAGTCCTGAAGAGGTTGAATGTAGAGCAGTGAATTATCCCCAAAAGACGCTGGAAGACTTGGGACAAACAGTTTATTGCAATACATCATTTGGATTGTCATGTTCTAATGAAGACAATGCAGAGGGCTTGCCACCAATTTGCTATAATTATGAAATACGTGTATACTGTTGTAAAGAAAACTGCCCTTCAGATACAACCACAAGTACACCATCTACATCAACAGAAACACCATCCACTACTTCACCAACTACTGAAACATTAACCCCTACTTCAACAGAAACACCATCCACAATCACATCCACTGTTACACCAACTACTGGAACATTGACACCAACTTCTACAGAAACACCATCCACAACTGCATCCACTACTTCACCAACTACTGAAACATCAACGCCTACTTCAACAGAGACACCATCCACAACTGCATCCACTACTTCACCAACTACTGAAACATCAACGCCTACTTCAACAGAGACACCATCCACAACAGCATCCACTACTTCACCAACGACTGAAACATTAACGCCTACTTCAACAGAGACACCATCCACAATCACATCCACTGTTACACCAACTACTGAAACATCAACACCTACATCAACAGAAACAGTACCTACACCTAGTACAACTACTGCTACAACAACACCTACCAGTACAACAACTCCAATCTGTGTCCCTAGATGTGAATGGTCAGATTGGATTGATAGCAACAAACCCAATACAGAGCCAGAAGGATTTGAGACTGAATCCATCCCCTTATTATGGAACTCAAGGAGGATAACTTGTCAGAGTCCTGAAGAGGTTGAATGTAGAGCAGTGAATTATCCCCAAAAGACGCTGGAAGACTTGGGACAAACAGTTTATTGCAATACATCATTTGGATTGTCATGTTCTAATGAAGACAATGCAGAGGGCTTGCCACCAATTTGTTATAATTATGAAATACGTGTATACTGTTGTAAAGAAAACTGCCCTTCAGATACAACCCCAAGTACACCATCTACATCAACAGAAACACCATCCACAACTACATCTACTACTTCACCAACTACTGAAACATCAACGCCTACTTCAACAGAGACACCATCCACAATCACATTCACTATTACACCAACTACTGGAACTTCAACACCAACTTCTACAGAAACACCACCCACACCAGCATCCACTACTTCACCAACTACTGAAACATCAACGCCTACCTCAACAGAGACACCATCCACAACAGCATCCACTACTTCACCAACGACTGAAACATCAACGCCTACTTCAACAGAGACACCATCCACAATCACATCCACTGTTACACCAACTACTGAAACATCAACACCTACATCAACAGAAACAGTACCTACACCTAGTACAACTACTGCTACAACAACACCTACCAGTACAACAACTCCAATCTGTGTCCCTAGATGTGAATGGTCAGATTGGATTGATAGCAACAAACCCAATACAGAGCCAGAAGGATTTGAGACTGAGTCCATCCCATTATTATGGAACTCAAGGAGGATAACTTGTCAGAGTCCTGAAGAGGTTGAATGTAGAGCAGTGAATTATCCCCAAAAGACGCTGGAAGACTTGGGACAAACAGTTTATTGCAATACATCATTTGGACTGTCATGTTCTAATGAAGACAATGCAGAGGGCTTGCCACCAATTTGTTATAATTATGAAATACGTGTATACTGTTGTAAAGAAAACTGCCCTTCAGATACAACCCCAAGTACACCATCTACATCAACAGAAACACCATCCACAACTACATCCACTACTTCACCAACTACTGAAACATCAACGCCTACTTCAACAGAGACACCATCCACAATCACATTCACTATTACACCAACTACTGGAACTTCAACACCAACTTCTACAGAAACACCACCCACACCAGCATCCACTACTTCACCAACTACTGAAACATCAACGCCTACTTCAACAGAGACACCATCCACAATCACATCCACTGTTACAGCTACTTCAGAAACATTGACACCTACATCAACAGAAACAGTACCTACACCTAGTACAACTACTGCGACAACAGCAACACCTACCAGTACAACAACTCCAATCTGTGTCCCTAGATGTGAATGGTCAGATTGGATTGATAGCAACAAACCCAATACAGAGCCAGAAGGATTTGAGACTGAATCCATCCCCTTATTATGGAACACAAAGAGGATAACTTGTCAGAGTCCTGAAGAGGTTGAATGTAGAGCAGTGAATTATCCCCAAAAGACGCTGGAAGACTTGGGACAAACAGTTTATTGCAATACATCATTTGGACTGTCATGTTCTAATGAAGACAATGCAGAGGGCTTGCCACCAATTTGCTATAATTATGAAATACGTGTATACTGTTGTAAAGACAACTGCCCTTCAGATACAACCACAAGTACACCATCTACATCAACAGAAACACCATCCACAACTGCATCCACTACTTCACCAACTACTGAAACATCAACCCCTACTTCAACAGAAACACCATCCACAATCACATCTACTGTTACACCAACTACTGGAACATCGACACCAACTTCTACAGAAACACCAATCACAACAACATCCATTACTTCACCAACGACTGAAACATCGACACCCACTTCTACAGAAACACCATCCACAACAGCATCCACTACTTCACCAACTACTGAAACATCAACGCCTACTTCAACAGAGACACCATCCACAATCACATCCACTGTTACACCAACTACTGAAACATTAACACCTACATCAACAGAAACAGTACCTACACCTAGTACAACTACTGCTACAACAACACCTACCAGTACAACAACTCCAATCTGTGTCCCTAGATGTGAATGGTCAGATTGGATTGATAGCAACAAACCCAATACAGAGCCAGAAGGATTTGAGACTGAATCCATCCCCTTATTATGGAACTCAAAGAGGATAACTTGTCAGAGTCCTGAAGAGGTTGAATGTAGAGCAGTGAATTATCCCCAAAAGACGCTGGAAGACTTGGGACAAACAGTTTATTGCAATACATCATTTGGACTGTCATGTTCTAATGAAGACAATGCAGAGGGCTTGCCACCAATTTGTTATAATTATGAAATACGTGTATACTGTTGTAAAGACAACTGCCCTTCAGATACAACCACAAGTACACCATCTACATCAACAGAAACACCATCCACAACTGCATCCACTACTTCACCAACTACTGAAACATCAACCCCTACTTCAACAGAAACACCATCCACAATCACATCCACTGTTACACCAACTACTGGAACATTGACACCAACTTCTACAGAAACACCATCCACAATCACATCCACTGTTACACCAACTACTGAAACATCAACACCTACATCAACAGAAACAGTACCTACACCTAGTACAACTACTGCTACAACAACACCTACCAGTACAACAACTCCAATCTGTGTCCCTAGATGTGAATGGTCAGATTGGATTGATAGCAACAAACCCAATACAGAGCCAGAAGGATTTGAGACTGAGTCCATCCCCTTATTATGGAACTCAAGGAGGATAACTTGTCAGAGTCCTGAAGAGGTTGAATGTAGAGCAGTGAATTATCCCCAAAAGACGCTGGAAGACTTGGGACAAACAGTTTATTGCAATACATCATTTGGACTGTCATGTTCTAATGAAGACAATGCAGAGGGCTTGCCACCAATTTGTTATAATTATGAAATACGTGTATACTGTTGTAAAGAAAACTGCCCTTCAGATACAACCACAAGTACACCATCTACATCAACAGAAACACCATCCACAACTACATCCACTACTTCACCAACTACTGAAACATCAACCCCTACTTCAACAGAAACACCATCCACAATCACATCTACTGTTACACCAACTACTGGAACTTCAACACCAACTTCTACAGAAACACCACCCACACCAGCATCCACTACTTCACCAACTACTGAAACATCTACATCAACTTCTACAGAAACACCACCCACACCAGCATCCACTACTTCACCAACTACTGAAACATCAACATCTACTTCAACAGAGACACCATCCACAATCACATCCACTGTTACACCAACTACTGAAACATCAACACCTACATCAACAGAAACAGTACCTACACCTAGTACAACTACTGCTACAACAACACCTACCAGTACAACAACTCCAATCTGTGTCCCTAGATGTGAATGGTCAGATTGGATTGATAGCAACAAACCCAATACAGAGCCAGAAGGATTTGAGACTGAGTCCATCCCCTTATTATGGAACTCAAGGAGGATAACTTGTCAGAGTCCTGAAGAGGTTGAATGTAGAGCAGTGAATTATCCCCAAAAGACGCTGGAAGACTTGGGACAAACAGTTTATTGCAATACATCATTTGGACTGTCATGTTCTAATGAAGACAATGCAGAGGGCTTGCCACCAATTTGTTATAATTATGAAATACGTGTATACTGTTGTAAAGAAAACTGCCCTTCAGATACAACCACAAGTACACCATCTACATCAACAGAAACACCATCCACAACTACATCCACTACTTCACCAACTACTGAAACATCAACCCCTACTTCAACAGAAACACCATCCACAATCACATCTACTGTTACACCAACTACTGGAACTTCAACACCAACTTCTACAGAAACACCACCCACACCAGCATCCACTACTTCACCAACTACTGAAACATCTACATCAACTTCTACAGAAACACCACCCACACCAGCATCCACTACTTCACCAACTACTGAAACATCAACATCTACTTCAACAGAGACACCATCCACAATCACATCCACTGTTACACCAACTACTGAAACATCAACACCTACATCAACAGAAACAGTACCTACACCTAGTACAACTACTGCTACAACAACACCTACCAGTACAACAACTCCAATCTGTGTCCCTAGATGTGAATGGTCAGATTGGATTGATAGCAACAAACCCAATACAGAGCCAGAAGGATTTGAGACTGAGTCCATCCCCTTATTATGGAACTCAAGGAGGATAACTTGTCAGAGTCCTGAAGAGGTTGAATGTAGAGCAGTGAATTATCCCCAAAAGACGCTGGAAGACTTGGGACAAACAGTTTATTGCAATACATCATTTGGACTGTCATGTTCTAATGAAGACAATGCAGAGGGCTTGCCACCAATTTGTTATAATTATGAAATACGTGTATACTGTTGTAAAGAAAACTGCCCTTCAGATACAACCACAAGTACACCATCTACATCAACAGAAACACCATCCACAACTACATCCACTACTTCACCAACTACTGAAACATCAACCCCTACTTCAACAGAAACACCATCCACAATCACATCTACTGTTACACCAACTACTGGAACTTCAACACCAACTTCTACAGAAACACCAATCACAACAACATCCATTACTTCACCAACGACTGAAACATCGACACCCACTTCTACAGAAACACCATCCACAACAGCATCCACTACTTCACCAACTACTGAAACATCAACGCCTACTTCAACAGAGACACCATCCACAATCACATCCACTGTTACACCAACTACTGAAACATTAACACCTACATCAACAGAAACAGTACCTACACCTAGTACAACTACTGCTACAACAACACCTACCAGTACAACAACTCCAATCTGTGTCCCTAGATGTGAATGGTCAGATTGGATTGATAGCAACAAACCCAATACAGAGCCAGAAGGATTTGAGACTGAATCCATCCCCTTATTATGGAACTCAAAGAGGATAACTTGTCAGAGTCCTGAAGAGGTTGAATGTAGAGCAGTGAATTATCCCCAAAAGACGCTGGAAGACTTGGGACAAACAGTTTATTGCAATACATCATTTGGACTGTCATGTTCTAATGAAGACAATGCAGAGGGCTTGCCACCAATTTGTTATAATTATGAAATACGTGTATACTGTTGTAAAGAAAACTGCCCTTCAGATACAACCACAAGTACACCATCTACATCAACAGAAACACCATCCACAACTACATCCACTACTTCACCAACTACTGAAACATCGACACCTACTTCAACAGAAACACCATCCACAATCACATCTACTGTTACACCAACTACTGGAACATCGACACCAACTTCTACAGAAACACCAATCACAACAACATCCATTACTTCACCAACGACTGAAACATCGACACCCACTTCTACAGAAACACCATCCACAACAGCATCCACTACTTCACCAACTACTGAAACAGCAACGCCTACTTCAACAGAGACACCATCCACAATCACATCCACCGTTACACCAACTACTGAAACATCAACACCTACATCAACAGAAACAGTACCTACACCTAGTACAACTACTGCTACAACAACACCTACCAGTACAACAACTCCAATCTGTGTCCCTAAATGTGAATGGTCAGATTGGATTGATAGCAACAAACCCAATACAGAGCCAGAAGGATTTGAGACTGAATCCATCCCCTTATTATGGAACTCAAAGAGGATAACTTGTCAGAGTCCTGAAGAGGTTGAATGTAGAGCAGTGAATTATCCCCAAAAGACGCTGGAAGACTTGGGACAAACAGTTTATTGCAATACATCATTTGGACTGTCATGTTCTAATGAAGACAATGCAGAGGGCTTGCCACCAATTTGTTATAATTATGAAATACGTGTATACTGTTGTAAATACAACTGCCCTTCAGATACAACCACAAGTACACCATATACATCAACAGAAACACCATCCACAACTGCATCCACTACTTCACCAACTACTGAAACATCAACCCCTACTTCAACAGAAACACCATCCACAATCACATCCACTGTTACACCAACTACTGGAACACTGACACCAACTTCTACAGAAACACCATCCACAACTGCATCCACTACTTCACCTACTATTGAAACATCAACCCCTACTTCAACAGAAACACCATCCACAATCACATCAACTGTTACACCAACTACTGGAACGTCGACACCAACTTCTACAGAAACACCAATCACAACAACATCCATTACTTCACCAACTACTGAAACATCGACACCAACTTCTACAGAAACACCATCCACAACTGCATCCACTACTTCACCAACTACTGAAACACCAACGCCTACTTCAACAGAGACACCATCCACAATCACATCCACTATTACACCAACTACTGGAACTTCAACACCAACTTCTACAGAAACACCAATCACAACAACATCCATTACTTCACCAACGACTGAAACATCGACACCAACTTCTACAGAAACACCATCCACAACAGCATCCACTACTTCACCAACTACTGAAACAGCAACGCCTACTTCAACAGAGACACCATCCACAATCACATCTACTGTTACACCTACTACTGGAACACTGACACCAACTTCTACAGAAACACCATCCACAACTGCATCCACTACTTCACCTACTACTGAAACATTAACCCCTACTTCAACAGAAACACCATCCACAATCACATCAACTGTTACACCAACTACTGGAACGTCGACACCAACTTCTACAGAAACACCAATCACAACAACATCCATTACTTCACCAACTACTGAAACATCGACACCAACTTCTACAGAAACACCATCCACAACTGCATCCACTACTTCACCAACTACTGAAACATCAACGCCTACTTCAACAGAGACACCATCCACAATCACATCCACTATTACACCAACTACTGGAACTTCAACACCAACTTCTACAGAAACACCATCCACAACTGCATCCACTACTTCACCAACGACTGAAACATCGACACCTACATCAACAGAAACACCATCCACAACAGCATCCACTACTTCACCAACGACTGAAATATCGACACCTACATCAACAGAAACACCATCCCTAGGCACATCCACTGTTACACCAACTACTGGAACTTCGGCACCAACTTCTACAGAAACACCATCCACAACAACATCCATTACTTCACCAACGACTGAAACATCAACACCAACTTCTACAGAAACACCATCCACAATCACATCCACTGTTACACCAACTACTGAAACATCAACACCTACTTCAACAGAAACTACATCTACAACAATTCCAGTAACAACTATACCAACAGAAACTCCATCTACAGTTGTTACAGTAACAACTTTATCAACAGAAACCCCATCTACAACAGTTTCAGTAACAACTATACCAACAGAAACTCCATCTACAATTGTTACAGTAACAACTATATCAACAGAAACTCCATCTACAACTGTTACAGTGACACCTATATCAACAAAATCTCCATCTACAATTGTTACAGCAACACCCAAATCAACAAAAACACCATCTATAACTATTGGATCTACAACAACTATGTCAACAGAAAAACCATCTACATCTAGCAAATCTACAACAACATCCACATCAACAAAGCCTGTTACTACTACAACAAAGTTCACTGTGCATACAGGTCCAGTTCGCACCACTCCAAATCCAGAACAACCATCAACTCAATGTAACTGCACATATTTAAATGCAATATTCTTACCAG
Seq A exon
GTGAGCAATCATTCGATGATTACAATTCAATTTAGTTGTTCAACCTTAATCCTTGCATATGTGCACATTAACTTAACCCTGCATTACATTCAACCTTACTTATGTAAAAACATCTCCCTTTTCGCTTAACTCTCTTACACATCCTTTTTATTCTAATTATAG
Seq C2 exon
GGTCATCAATATACAATAAAACAGATAAAGCAGGTTGGTGCTTTTCCGCTCACTGCAACTCCTCGTGCAGTATTATCATACAGGCTGAGCCATGTGCAACAACAACACCACCAACAACAACACCAACAACGACACCAACAACGACGACATCCAAACCGAACAAAAATGATTGCACACAGGTCCAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=NA C2=0.312
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(42.4=0.8),PF133301=Mucin2_WxxW=WD(100=2.8),PF133301=Mucin2_WxxW=WD(100=2.8),PF133301=Mucin2_WxxW=WD(100=2.8),PF133301=Mucin2_WxxW=WD(100=2.8),PF133301=Mucin2_WxxW=WD(100=2.8),PF133301=Mucin2_WxxW=WD(100=2.8),PF133301=Mucin2_WxxW=WD(100=2.8),PF133301=Mucin2_WxxW=WD(100=2.8),PF133301=Mucin2_WxxW=WD(100=2.8),PF133301=Mucin2_WxxW=WD(100=2.8),PF133301=Mucin2_WxxW=WD(100=2.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACAGGTCCAGTTCGCACC
R:
TCGGTTTGGATGTCGTCGTTG
Band lengths:
247-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]