BtaINT0096564 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51376675-51377067:-
Coord C1 exon
chr29:51376969-51377067
Coord A exon
chr29:51376857-51376968
Coord C2 exon
chr29:51376675-51376856
Length
112 bp
Sequences
Splice sites
5' ss Seq
CAGGCACGT
5' ss Score
2.9
3' ss Seq
TGTTGTCTCTGACCTTGTAGGGG
3' ss Score
9.08
Exon sequences
Seq C1 exon
AGACCTCCGGCAGCCTGATGCCCTCCATTGTTCCCACAACCTCGCCTGGCCCCACCACACCCTGCCTTTGCCACGCCTTTGGGAAGTTCTTCCTACCAG
Seq A exon
GCACGTGAAGTATCACCCCTCCTGCAGAATCCTCCCTGGCATTTGGCTGCCTTGGTTGTGTCCTCATGCCCTTGGCCCTGCCCTGGCTGACCTGTTGTCTCTGACCTTGTAG
Seq C2 exon
GGGACATTGTCTACAACAAGACAGATGGGGCGGGCTGCCCCTTCTTAGCCATCTGCAACCAGCGCTGTGACCTTGACCGCTTCCAGGGCGCCTGCACCACCTCCTCACCCCCAGGGACCTCAGCCTCTGTGCCCCCAACCACTCCACTTAGCGACTGTGATCGTACAATCCCTCCTCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=0.311
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCCCTCCATTGTTCCC
R:
ACAGTCGCTAAGTGGAGTGGT
Band lengths:
243-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]