HsaINT0106825 @ hg19
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7516]
Coordinates
chr11:1262081-1273754:+
Coord C1 exon
chr11:1262081-1272973
Coord A exon
chr11:1272974-1273572
Coord C2 exon
chr11:1273573-1273754
Length
599 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TATGGTGTTGTTCTTCACAGGGG
3' ss Score
9.51
Exon sequences
Seq C1 exon
GCCCGGCCCTCCCGGTCTCCACCGTGTGTGTCCGCGAGGTCTGCCGCTGGTCCAGCTGGTACAATGGGCACCGCCCAGAGCCCGGCCTGGGAGGCGGAGACTTTGAGACGTTTGAAAACCTGAGGCAGAGAGGGTACCAGGTATGCCCTGTGCTGGCTGACATCGAGTGCCGGGCGGCGCAGCTTCCCGACATGCCGCTGGAGGAGCTGGGCCAGCAGGTGGACTGTGACCGCATGCGGGGGCTGATGTGCGCCAACAGCCAACAGAGTCCCCCGCTCTGTCACGACTACGAGCTGCGGGTTCTCTGCTGCGAATACGTGCCCTGTGGCCCCTCCCCGGCCCCAGGCACCAGCCCTCAGCCCTCCCTCAGTGCCAGCACGGAGCCTGCTGTGCCTACCCCAACCCAGACCACAGCAACCGAAAAGACCACCCTATGGGTGACCCCGAGCATCCGGTCGACGGCGGCCCTCACCTCGCAGACTGGGTCCAGCTCAGGCCCCGTGACGGTCACCCCCTCGGCCCCAGGTACCACCACCTGCCAGCCCCGGTGTCAGTGGACAGAGTGGTTTGATGAGGACTACCCCAAGTCTGAACAACTTGGAGGGGACGTTGAGTCCTACGATAAGATCAGGGCCGCTGGAGGGCACTTATGCCAGCAGCCTAAGGACATAGAGTGCCAGGCCGAGAGCTTCCCCAACTGGACCCTGGCACAGGTGGGGCAGAAGGTGCACTGTGACGTCCACTTCGGCCTGGTGTGCAGGAACTGGGAGCAGGAGGGCGTCTTCAAGATGTGCTACAACTACAGGATCCGGGTCCTCTGCTGCAGTGACGACCACTGCAGGGGACGTGCCACAACCCCGCCACCGACCACAGAGCTGGAGACGGCCACCACCACCACCACCCAGGCCCTGTTCTCAACGCCGCAGCCTACGAGTAGCCCGGGGCTGACCAGGGCTCCCCCGGCCAGCACCACAGCAGTCCCCACCCTCTCAGAAGGACTGACATCCCCCAGATACACAAGCACCCTTGGTACAGCCACCACGGGAGGCCCCACGACGCCTGCAGGCTCCACAGAACCCACTGTCCCAGGGGTGGCCACATCCACCCTTCCAACACGCTCAGCCCTTCCAGGGACGACGGGGAGCTTGGGCACATGGCGCCCCTCACAGCCACCCACGCTGGCCCCAACAACAATGGCAACCTCCAGAGCTCGCCCGACAGGCACAGCCAGCACCGCTTCCAAAGAGCCGCTGACCACGAGCCTGGCGCCAACACTCACGAGCGAGCTGTCCACCTCTCAGGCCGAGACCAGCACGCCCAGGACAGAGACGACAATGAGCCCCTTGACTAACACCACCACCAGCCAGGGCACGACCCGCTGTCAACCGAAGTGTGAGTGGACAGAGTGGTTTGACGTGGACTTCCCAACCTCAGGGGTTGCAGGCGGGGACATGGAAACTTTTGAAAACATCAGGGCTGCTGGGGGCAAGATGTGCTGGGCACCAAAGAGCATAGAGTGCCGGGCGGAGAACTACCCCGAGGTAAGCATCGACCAGGTCGGGCAGGTGCTGACCTGCAGCCTGGAGACGGGGCTGACCTGCAAGAACGAAGACCAGACAGGCAGGTTCAACATGTGCTTCAACTACAACGTGCGTGTGCTTTGCTGTGACGACTACAGCCACTGCCCCAGTACCCCAGCCACCAGCTCCACGGCCACGCCCTCCTCAACTCCGGGGACGACCTGGATCCTCACAAAGCCGACCACAACAGCCACTACGACTGCGTCCACTGGATCCACGGCCACCCCGACCTCCACCCTGAGAACAGCTCCCCCTCCCAAAGTGCTGACCACCACGGCCACCACACCCACAGTCACCAGCTCCAAAGCCACTCCCTCCTCCAGTCCAGGGACTGCAACCGCCCTTCCAGCACTGAGAAGCACAGCCACCACACCCACAGCTACCAGCGTTACACCCATCCCCTCTTCCTCCCTGGGCACCACCTGGACCCGCCTATCACAGACCACCACACCCACGGCCACCATGTCCACAGCCACACCCTCCTCCACTCCAGAGACTGCCCACACCTCCACAGTGCTTACCGCCACGGCCACCACAACTGGGGCCACCGGCTCTGTGGCCACCCCCTCCTCCACCCCAGGAACAGCTCACACTACCAAAGTGCCAACTACCACAACCACGGGCTTCACAGCCACCCCCTCCTCCAGCCCAGGGACGGCACTCACGCCTCCAGTGTGGATCAGCACAACCACCACACCCACAACCAGAGGCTCCACGGTGACCCCCTCCTCCATCCCGGGGACCACCCACACCGCCACAGTGCTGACCACCACCACCACAACTGTGGCCACTGGTTCTATGGCAACACCCTCCTCTAGCACACAGACCAGTGGTACTCCCCCATCACTGACCACCACGGCCACTACGATCACGGCCACCGGCTCCACCACCAACCCCTCCTCAACTCCTGGGACAACTCCCATCCCCCCAGTGCTGACCACCACCGCCACCACACCTGCAGCCACCAGCAACACAGTGACTCCCTCCTCTGCCCTAGGGACCACCCACACACCCCCAGTGCCGAACACCATGGCCACCACACACGGGCGATCCCTGCCCCCCAGCAGTCCCCACACGGTGCGCACAGCCTGGACTTCGGCCACCTCGGGCATCTTGGGCACCACCCACATCACAGAGCCTTCCACGGTGACTTCCCACACCCTAGCAGCAACCACCGGTACCACCCAGCACTCGACTCCAGCCCTTTCCAGCCCTCACCCTAGCAGCAGAACCACCGAGTCACCCCCTTCTCCAGGGACGACCACCCCGGGCCACACCACGGCCACCTCCAGGACCACAGCCACGGCCACACCCAGCAAGACCCGCACCTCGACCCTGCTGCCCAGCAGCCCCACATCGGCCCCCATAACCACGGTGGTGACCATGGGCTGTGAGCCCCAGTGTGCCTGGTCAGAGTGGCTGGACTACAGCTACCCCATGCCGGGGCCCTCTGGCGGGGACTTTGACACCTACTCCAACATCCGTGCGGCCGGAGGGGCCGTCTGTGAGCAGCCCCTGGGCCTCGAGTGCCGTGCCCAGGCCCAGCCTGGTGTCCCCCTGCGGGAGTTGGGCCAGGTCGTGGAATGCAGCCTGGACTTTGGCCTGGTCTGCAGGAACCGTGAGCAGGTGGGGAAGTTCAAGATGTGCTTCAACTATGAAATCCGTGTGTTCTGCTGCAACTACGGCCACTGCCCCAGCACCCCGGCCACCAGCTCTACGGCCATGCCCTCCTCCACTCCGGGGACGACCTGGATCCTCACAGAGCTGACCACAACAGCCACTACGACTGAGTCCACTGGATCCACGGCCACCCCGTCCTCCACCCCAGGGACCACCTGGATCCTCACAGAGCCGAGCACTACAGCCACCGTGACGGTGCCCACCGGATCCACGGCCACCGCCTCCTCCACCCAGGCAACTGCTGGCACCCCACATGTGAGCACCACGGCCACGACACCCACAGTCACCAGCTCCAAAGCCACTCCCTTCTCCAGTCCAGGGACTGCAACCGCCCTTCCAGCACTGAGAAGCACAGCCACCACACCCACAGCTACCAGCTTTACAGCCATCCCCTCCTCCTCCCTGGGCACCACCTGGACCCGCCTATCACAGACCACCACACCCACGGCCACCATGTCCACAGCCACACCCTCCTCCACTCCAGAGACTGTCCACACCTCCACAGTGCTTACCACCACGGCCACCACAACCGGGGCCACCGGCTCTGTGGCCACCCCCTCCTCCACCCCAGGAACAGCTCACACTACCAAAGTGCTGACTACCACAACCACGGGCTTCACAGCCACCCCCTCCTCCAGCCCAGGGACGGCACGCACGCTTCCAGTGTGGATCAGCACAACCACCACACCCACAACCAGAGGTTCCACGGTGACCCCCTCCTCCATCCCGGGGACCACCCACACCCCCACAGTGCTGACCACCACCACCACAACTGTGGCCACTGGTTCTATGGCAACACCCTCCTCTAGCACACAGACCAGTGGTACTCCCCCATCACTGACCACCACGGCCACTACGATCACGGCCACCGGCTCCACCACCAACCCCTCCTCAACTCCAGGGACAACACCTATCCCCCCAGTGCTGACCACCACCGCCACCACACCTGCAGCCACCAGCAGCACAGTGACTCCCTCCTCTGCCCTAGGGACCACCCACACACCCCCAGTGCCGAACACCACGGCCACCACACACGGGCGATCCCTGTCCCCCAGCAGTCCCCACACGGTGCGCACAGCCTGGACTTCGGCCACCTCAGGCACCTTGGGCACCACCCACATCACAGAGCCTTCCACGGGGACTTCCCACACCCCAGCAGCAACCACCGGTACCACCCAGCACTCGACTCCAGCCCTGTCCAGCCCTCACCCTAGCAGCAGGACCACCGAGTCACCCCCTTCTCCAGGGACGACCACCCCGGGCCACACCAGGGCCACCTCCAGGACCACGGCCACGGCCACACCCAGCAAGACCCGCACCTCGACCCTGCTGCCCAGCAGCCCCACATCGGCCCCAATAACCACGGTGGTGACCATGGGCTGTGAGCCCCAGTGTGCCTGGTCAGAGTGGCTGGACTACAGCTACCCCATGCCGGGGCCCTCTGGCGGGGACTTTGACACCTACTCCAACATCCGTGCGGCCGGAGGGGCCGTCTGTGAGCAGCCCCTGGGCCTCGAGTGCCGTGCCCAGGCCCAGCCTGGTGTCCCCCTGCGGGAGTTGGGCCAGGTCGTGGAATGCAGCCTGGACTTTGGCCTGGTCTGCAGGAACCGTGAGCAGGTGGGGAAGTTCAAGATGTGCTTCAACTATGAAATCCGTGTGTTCTGCTGCAACTACGGCCACTGCCCCAGCACCCCGGCCACCAGCTCTACGGCCACGCCCTCCTCCACTCCAGGGACGACCTGGATCCTCACAGAGCAGACCACAGCAGCCACTACGACCGCAACCACTGGATCCACGGCCATCCCGTCCTCCACCCCGGGAACAGCTCCCCCTCCCAAAGTGCTGACCAGCACGGCCACCACACCCACAGCCACCAGTTCCAAAGCCACTTCCTCCTCCAGTCCAAGGACTGCAACCACCCTTCCAGTGCTGACAAGCACAGCCACCAAATCCACAGCTACCAGCTTTACACCCATCCCCTCCTTCACCCTTGGGACCACCGGGACCCTCCCAGAACAGACCACCACACCCATGGCCACCATGTCCACAATCCACCCCTCCTCCACTCCGGAGACCACCCACACCTCCACAGTGCTGACCACGAAGGCCACCACGACAAGGGCCACCAGTTCCATGTCCACCCCCTCCTCCACTCCGGGGACGACCTGGATCCTCACAGAGCTGACCACAGCAGCCACTACAACTGCAGCCACTGGCCCCACGGCCACCCCGTCCTCCACCCCAGGGACCACCTGGATCCTCACAGAGCCCAGCACTACAGCCACCGTGACGGTGCCCACCGGATCCACGGCCACCGCCTCCTCCACCCGGGCAACTGCTGGCACCCTCAAAGTGCTGACCAGCACGGCCACCACACCCACAGTCATCAGCTCCAGAGCCACTCCCTCCTCCAGTCCAGGGACTGCAACCGCCCTTCCAGCACTGAGAAGCACAGCCACCACACCCACAGCTACCAGCGTTACAGCCATCCCCTCTTCCTCCCTGGGCACCGCCTGGACCCGCCTATCACAGACCACCACACCCACGGCCACCATGTCCACAGCCACACCCTCCTCTACTCCAGAGACTGTCCACACCTCCACAGTGCTTACCACCACGACCACCACAACCAGGGCCACCGGCTCTGTGGCCACCCCCTCCTCCACCCCAGGAACAGCTCACACTACCAAAGTGCCGACTACCACAACCACGGGCTTCACAGCCACCCCCTCCTCCAGCCCAGGGACGGCACTCACGCCTCCAGTGTGGATCAGCACAACCACCACACCCACAACCAGAGGCTCCACGGTGACCCCCTCCTCCATCCCGGGGACCACCCACACCGCCACAGTGCTGACCACCACCACCACAACTGTGGCCACTGGTTCTATGGCAACACCCTCCTCTAGCACACAGACCAGTGGTACTCCCCCATCACTGACCACCACGGCCACTACGATCACAGCCACCGGCTCCACCACCAACCCCTCCTCAACTCCAGGGACAACTCCCATCCCCCCAGTGCTGACCACCACCGCCACCACACCTGCAGCCACCAGCAGCACAGTGACTCCCTCCTCTGCCCTAGGGACCACCCACACACCCCCAGTGCCGAACACCACGGCCACCACACACGGGCGGTCCCTGCCCCCCAGCAGTCCCCACACGGTGCGCACAGCCTGGACTTCGGCCACCTCGGGCATCTTGGGCACCACCCACATCACAGAGCCTTCCACGGTGACTTCCCACACCCCAGCAGCAACCACCAGTACCACCCAGCACTCGACTCCAGCCCTGTCCAGCCCTCACCCTAGCAGCAGGACCACCGAGTCACCCCCTTCTCCAGGGACGACCACCCCGGGCCACACCAGGGGCACCTCCAGGACCACAGCCACAGCCACACCCAGCAAGACCCGCACCTCGACCCTGCTGCCCAGCAGCCCCACATCGGCCCCCATAACCACGGTGGTGACCACGGGCTGTGAGCCCCAGTGTGCCTGGTCAGAGTGGCTGGACTACAGCTACCCCATGCCGGGGCCCTCTGGCGGGGACTTTGACACCTACTCCAACATCCGTGCGGCCGGAGGGGCAGTCTGTGAGCAGCCCCTGGGCCTCGAGTGCCGTGCCCAGGCCCAGCCTGGTGTCCCCCTGCGGGAGTTGGGCCAGGTCGTGGAATGCAGCCTGGACTTTGGCCTGGTCTGCAGGAACCGTGAGCAGGTGGGGAAGTTCAAGATGTGCTTCAACTATGAAATCCGTGTGTTCTGCTGCAACTACGGCCACTGCCCCAGCACCCCGGCCACCAGCTCTACGGCCACGCCCTCCTCAACTCCGGGGACGACCTGGATCCTCACAAAGCTGACCACAACAGCCACTACGACTGAGTCCACTGGATCCACGGCCACCCCGTCCTCCACCCCAGGGACCACCTGGATCCTCACAGAGCCGAGCACTACAGCCACCGTGACGGTGCCCACCGGATCCACGGCCACCGCCTCCTCCACCCAGGCAACTGCTGGCACCCCACATGTGAGCACCACGGCCACGACACCCACAGTCACCAGCTCCAAAGCCACTCCCTTCTCCAGTCCAGGGACTGCAACCGCCCTTCCAGCACTGAGAAGCACAGCCACCACACCCACAGCTACCAGCTTTACAGCCATCCCCTCCTCCTCCCTGGGCACCACCTGGACCCGCCTATCACAGACCACCACACCCACGGCCACCATGTCCACAGCCACACCCTCCTCCACTCCAGAGACTGCCCACACCTCCACAGTGCTTACCACCACGGCCACCACAACCAGGGCCACCGGCTCTGTGGCCACCCCCTCTTCCACCCCAGGAACAGCTCACACTACCAAAGTGCCGACTACCACAACCACGGGCTTCACAGTCACCCCCTCCTCCAGCCCAGGGACGGCACGCACGCCTCCAGTGTGGATCAGCACAACCACCACACCCACAACCAGTGGCTCCACGGTGACCCCCTCCTCCGTCCCGGGGACCACCCACACCCCCACAGTGCTGACCACCACCACCACAACTGTGGCCACTGGTTCTATGGCAACACCCTCCTCTAGCACACAGACCAGTGGTACTCCCCCATCACTGATCACCACGGCCACTACGATCACGGCCACCGGCTCCACCACCAACCCCTCCTCAACTCCAGGGACAACACCTATCCCCCCAGTGCTGACCACCACCGCCACCACACCTGCAGCCACCAGCAGCACAGTGACTCCCTCCTCTGCCCTAGGGACCACCCACACACCCCCAGTGCCGAACACCACGGCCACCACACACGGGCGATCCCTGTCCCCCAGCAGTCCCCACACGGTGCGCACAGCCTGGACTTCGGCCACCTCAGGCACCTTGGGCACCACCCACATCACAGAGCCTTCCACGGGGACTTCCCACACCCCAGCAGCAACCACCGGTACCACCCAGCACTCGACTCCAGCCCTGTCCAGCCCTCACCCTAGCAGCAGGACCACCGAGTCACCCCCTTCCCCAGGGACGACCACCCCGGGCCACACCACGGCCACCTCCAGGACCACGGCCACGGCCACACCCAGCAAGACCCGCACCTCGACCCTGCTGCCCAGCAGCCCCACATCGGCCCCCATAACCACGGTGGTGACCACGGGCTGTGAGCCCCAGTGTGCCTGGTCAGAGTGGCTGGACTACAGCTACCCCATGCCGGGGCCCTCTGGCGGGGACTTTGACACCTACTCCAACATCCGTGCGGCCGGAGGGGCCGTCTGTGAGCAGCCCCTGGGCCTCGAGTGCCGTGCCCAGGCCCAGCCTGGTGTCCCCCTGGGGGAGTTGGGCCAGGTCGTGGAATGCAGCCTGGACTTTGGCCTGGTCTGCAGGAACCGTGAGCAGGTGGGGAAGTTCAAGATGTGCTTCAACTATGAAATCCGTGTGTTCTGCTGCAACTACGGCCACTGCCCCAGCACCCCGGCCACCAGCTCTACGGCCATGCCCTCCTCCACTCCGGGGACGACCTGGATCCTCACAGAGCTGACCACAACAGCCACTACGACTGCATCCACTGGATCCACGGCCACCCCGTCCTCCACCCCGGGAACAGCTCCCCCTCCCAAAGTGCTGACCAGCCCGGCCACCACACCCACAGCCACCAGTTCCAAAGCCACTTCCTCCTCCAGTCCAAGGACTGCAACCACCCTTCCAGTGCTGACAAGCACAGCCACCAAATCCACAGCTACCAGCGTTACACCCATCCCCTCCTCCACCCTTGGGACCACCGGGACCCTCCCAGAACAGACCACCACACCCGTGGCCACCATGTCCACAATCCACCCCTCCTCCACTCCGGAGACCACCCACACCTCCACAGTGCTGACCACGAAGGCCACCACGACAAGGGCCACCAGTTCCACGTCCACCCCCTCCTCCACTCCGGGGACGACCTGGATCCTCACAGAGCTGACCACAGCAGCCACTACAACTGCAGCCACTGGCCCCACGGCCACCCCGTCCTCCACCCCAGGGACCACCTGGATCCTCACAGAGCTGACCACAACAGCCACTACGACTGCGTCCACTGGATCCACGGCCACCCCGTCCTCCACCCCAGGGACCACCTGGATCCTCACAGAGCCGAGCACTACAGCCACCGTGACGGTGCCCACCGGATCCACGGCCACCGCCTCCTCCACCCAGGCAACTGCTGGCACCCCACATGTGAGCACCACGGCCACGACACCCACAGTCACCAGCTCCAAAGCCACTCCCTCCTCCAGTCCAGGGACTGCAACTGCCCTTCCAGCACTGAGAAGCACAGCCACCACACCCACAGCTACCAGCTTTACAGCCATCCCCTCCTCCTCCCTGGGCACCACCTGGACCCGCCTATCACAGACCACCACACCCACGGCCACCATGTCCACAGCCACACCCTCCTCCACTCCAGAGACTGTCCACACCTCCACAGTGCTTACCGCCACGGCCACCACAACCGGGGCCACCGGCTCTGTGGCCACCCCCTCCTCCACCCCAGGAACAGCTCACACTACCAAAGTGCCGACTACCACAACCACGGGCTTCACAGCCACCCCCTCCTCCAGCCCAGGGACGGCACTCACGCCTCCAGTGTGGATCAGCACAACCACCACACCCACAACCACCACACCCACAACCAGTGGCTCCACGGTGACCCCCTCCTCCATCCCGGGGACCACCCACACCGCCAGAGTGCTGACCACCACCACCACAACTGTGGCCACTGGTTCTATGGCAACACCCTCCTCTAGCACACAGACCAGTGGTACTCCCCCATCACTGACCACCACGGCCACTACGATCACGGCCACCGGCTCCACCACCAACCCCTCCTCAACTCCAGGGACAACACCCATCACCCCAGTGCTGACCAGCACGGCCACCACACCCGCAGCCACCAGCTCCAAAGCCACTTCCTCCTCCAGTCCAAGGACTGCAACCACCCTTCCAGTGCTGACAAGCACAGCCACAAAATCCACAGCTACCAGCTTTACACCCATCCCCTCCTCCACCCTGTGGACCACGTGGACCGTCCCAGCACAGACCACCACACCCATGTCCACCATGTCCACAATCCACACCTCCTCTACTCCAGAGACCACCCACACCTCCACAGTGCTGACCACCACAGCCACCATGACAAGGGCCACCAATTCCACGGCCACACCCTCCTCCACTCTGGGGACGACCCGGATCCTCACTGAGCTGACCACAACAGCCACTACAACTGCAGCCACTGGATCCACGGCCACCCTGTCCTCCACCCCAGGGACCACCTGGATCCTCACAGAGCCGAGCACTATAGCCACCGTGATGGTGCCCACCGGTTCCACGGCCACCGCCTCCTCCACTCTGGGAACAGCTCACACCCCCAAAGTGGTGACCACCATGGCCACTATGCCCACAGCCACTGCCTCCACGGTTCCCAGCTCGTCCACCGTGGGGACCACCCGCACCCCTGCAGTGCTCCCCAGCAGCCTGCCAACCTTCAGCGTGTCCACTGTGTCCTCCTCAGTCCTCACCACCCTGAGACCCACTGGCTTCCCCAGCTCCCACTTCTCTACTCCCTGCTTCTGCAGGGCATTTGGACAGTTTTTCTCGCCCG
Seq A exon
GTGAGTGCATGTGGATAACACTGCTGTACCCTTTCCCCACATGCTATGCCAACCTGGGTCTGCCTGTCCTGGGAGCCAGTGGCTTTCTCCCTGCTGGTCATGTTTGTTCCCCACTGGCCTCACTTGGCCCCTCCCGGCCACACTGGGTCCCCACTGGCCACACTGGGTCTCCTCTGGCCACAATCCGTCCGCACTGGCCACAATCAGTCCCCACTGGCCACACTTGGTCCCCACTGGCCACAATGCGTCCCCCTTGGCCACATTCGGTCTCCCCTGGACACAATCCATCCCCACTGGCCACACTGGGTCTCCTCTGGCCACAATCCGTCCGCACTGGCCACAATCAGTCCCCACTGGCCACACTCGGTCCCCACTGGCCACAATCCATCCCCACTGGCCACACTCGGTCCCCACTGGTCACAATCCGTCCCCAGTGGCCACACTTGGTCCCCACTGGCCACACTCAGCCTCTGCCCTCTCCACTCCCTTCCCTGGAACCGCTGCTCCCTCCTGCGCTGACCTCTGCCTTTGCTCTCCCAGAACTCTGGCTTACCCATCTCTGGGAGTGGCTTATCTTTCTATGGTGTTGTTCTTCACAG
Seq C2 exon
GGGAAGTCATCTACAATAAGACCGACCGAGCCGGCTGCCATTTCTACGCAGTGTGCAATCAGCACTGTGACATTGACCGCTTCCAGGGCGCCTGTCCCACCTCCCCACCGCCAGTGTCCTCCGCCCCGCTGTCCTCGCCCTCCCCTGCCCCTGGCTGTGACAATGCCATCCCTCTCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983-MUC5B:NM_002458:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.761 A=NA C2=0.120
Domain overlap (PFAM):
C1:
PF133301=Mucin2_WxxW=WD(100=2.5),PF133301=Mucin2_WxxW=WD(100=2.5),PF133301=Mucin2_WxxW=WD(100=2.5),PF133301=Mucin2_WxxW=WD(100=2.5),PF133301=Mucin2_WxxW=WD(100=2.5),PF133301=Mucin2_WxxW=WD(100=2.5),PF133301=Mucin2_WxxW=WD(100=2.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTATAGCCACCGTGATGG
R:
CGGCTCGGTCGGTCTTATTG
Band lengths:
342-941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)