GgaINT0053282 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14080471-14083233:-
Coord C1 exon
chr5:14080794-14083233
Coord A exon
chr5:14080494-14080793
Coord C2 exon
chr5:14080471-14080493
Length
300 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
GAGGAATAAGATTTACACAGTCT
3' ss Score
-6.92
Exon sequences
Seq C1 exon
GGAACGAGCACCATCGCATCCACAATTTTACAGAGCACGGTACCTACCAGCAGTGCCAGCACCACCAAGACCTCACCCCCTCCAACAAAAGGTACCCTCACAATTGCATCCACAAGTGCAGGGACCACCACACCGACCAGCAGTGCCAGCACCAGCAAGACCACTCCTCCAGTGATAGGGAGCACAACCACCATTGTCACCACCACACCCATAGTGACCAGCTCCCCCACCACTACTTTCACCACCTCCTCCCCCCCCACAAGCACCTGCCAGCCACGCTGTGCCTGGACACAGTGGTTTGATGTAGATTTCCCAAGCGCTGGTAGCCAGGGTGGAGACTTTGAGACCTTTGCAAATATCCGTGCCGCTGGTTATGACCTGTGCTCCCAGCCACAGGACATCAGGTGCCGTGCTGAAAACTACCCTGACAGGAGCCTGCAGAGTTTGGACCAGAAACTCAAGTGCAGCCTCGATGTTGGACTTGAGTGCAGAAACAAGGATCAGAACAGCAAGTACCCCATGTGCTTCAACTACCAGGTCAGTGTGCTGTGCTGTGACCACCAGCACTGCTTGACAACATTAACAACGCCCGGCACCACGCCAAGCACCACAACTGGCACCACTACAGCAACGCCGACAACTGGACTACCGACTACAACAATACCTACTGTCTCTGCTGGCTCCACGCTTTCCGAGACCACCACCACAAGCACCACGGTAGTCACCAAGACCACCAGCCCTCTGACAACAGGCCCAACCACAACCACAGCTGGAAGTACAACCAAGTCTGTTCCCGTTTCAACAGAAGGAACGAGCACCATCACATCCACAAGTGCAGGGATTACCACACCTACCAGCAGTGTCAGCACCACCAAGACCTCACCCCCTCCAACAGAAAGTACGACCATCATTGCATCCACAAGCGCAGGGACCACCACACCGACCAGCATTACCAGCACCACCAAGACCACTCCTCCTGTGACAGAAAGCACAACCACCATTGTCACCGCCACATCCTCAGTGACCAGCTCCCCCACCAGTACTGCCACCACCTTCTCCTCAACTAGCACCACTCCAGCAACGCCGCCCAGTACTGGACAAACCCAGACTACAGCAAAACCTCCTACTGTCTCTTCTGTCTCCACGCTTTCCGAGACCACCACCACAAGCACCACGGTACTCACCAAGACCACCAGCCCTCCGACAACAGGCCCAACCACAACCACAGCTGGAAGTACAACCAAGTCTGTTCCCGTTTCAACAGGAGGAACGAGCACCATCACATCCACAATTTTACAGAGCACGGTACCTACCAGCAGTGCCAGCACCACCAAGACCTCACCCCCTCCAACAAAAGGTACGACCACCATTGCATCCACAAGTGCAGGGACCACCACACCGACCAGCAGTGCCAGCACCAGCAAGACCACTCCTCCAGTGATAGGGAGCACAACCACCATTGTCACCACCACACCCATAGTGACCAGCTCCCCCACCACTACTTTCACCACCTCCTCCCCCCCCACAAGCACCTGCCAGCCACGCTGTGCCTGGACACAGTGGTTTGATGTAGATTTCCCAAGCGCTGGTAGCCAGGGTGGAGACTTTGAGACCTTTGCAAATATCCGTGCCGCTGGTTATGACCTGTGCTCCCAGCCACAGGACATCAGGTGCCGTGCTGAAAACTACCCTGACAGGAGCCTGCAGAGTTTGGACCAGAAACTCAAGTGCAGCCTCGATGTTGGACTTGAGTGCAGAAACAAGGATCAGAACAGCAAGTACCCCATGTGCTTCAACTACCAGGTCAGTGTGCTGTGCTGTGACCACCAGCACTGCTTGACAACATTAACAACGCCCGGCACCACGACAAGCACCACAACTGGCACCACTACAGCAACGCCGACAACTGGACTACCGACTACAACAATACCTACTGTCTCTGCTGGCTCCACGCTTTCCGAGACCACCACCACAAGCACCACGGTAGTCACCAAGACCACCAGCCCTCCGACAACAGGCCCAACCACAACCACAGCTGGAAGTACAACCAAGTCTGTTCCCGTTTCAACAGAAGGAACGAGCACCATCGCATCCACAATTTTACAGAGCACTGTATCTACCAGCAGTGCCAGTAGCCCCGTGACCAGTCCTGTTACAGAAAGCACAGCCACCACTATCCTCGCACCTACACAGACTACTGCAGCTGCCAGCAGCTCTGCCACTACCAGGGTTTCTCCTATTTTGACAGGACATTCAACTGCAATTGCAAGTACCCGTACCAACAATGCCAGCACTACCAAAATATCACCCTCTGTGACAGTATTCACTATCCCTTCATCTGCCAGCTCACTGCCCAGCTCTTCAACTATACTCACTCCTACATCAATCTCCACTGTAGTAAAACAGACTACAGCACAGTCCCCTACTTCAAGCCGTTCTG
Seq A exon
GTAGGTCATCATCTAAAGAGAAAGCTGTTTTTTCTTTTAGTGTGTTTGAATATCATTGCTACTGTTTTCTTCTGCGATTTGTACTATTACTCTTGCTTCTTTTAACAGAAAGAACTTTCCTTTTATCAGCCACTGTGCTCATCCTACACCTCTTAGCAGATTCCATGATTTCATTTTTATTACCCTGACCATGAAGGTGACATTGGTGACTCTGAAACCTTACAATATATTAATACCGGAAGTCCTAATGTTTGCAAATTCCCAAATGTTACATGGTACAGAGGAATAAGATTTACACAG
Seq C2 exon
TCTCTACTTACCATAGTAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740:ENSGALT00000010867:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF133301=Mucin2_WxxW=WD(100=11.2),PF133301=Mucin2_WxxW=WD(100=11.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]