MmuINT0102471 @ mm10
Intron Retention
Gene
ENSMUSG00000066108 | Muc5b
Description
mucin 5, subtype B, tracheobronchial [Source:MGI Symbol;Acc:MGI:1921430]
Coordinates
chr7:141857307-141865670:+
Coord C1 exon
chr7:141857307-141865325
Coord A exon
chr7:141865326-141865488
Coord C2 exon
chr7:141865489-141865670
Length
163 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTGTGCTCTTTCCCTCACAGGGG
3' ss Score
11.86
Exon sequences
Seq C1 exon
GCTCAGCTTCCACTGTGTCTACCGTGTGTGTTCATGAGGTCTGCCAATGGTCCATTTGGTATGATGAGAGCCATCCAGAGGCTGGCATGTCAGGCGGGGACTTTGAAACATTTGAGAACCTGAGGAAGAAGGGGCACCAGGTGTGTCAAACCCCCGTTGGCATCGAATGCCGTGCAGTGAAATTCCCTAGCATGGACTTAGAGAAGCTGGGTCAGAAGGTCAACTGTGACCCATCCTCTGGGCTGAGTTGCTTCAACAGTGAACAGAGCCCCCCGCTGTGCCACGACTATGAGCTGAGGGTTCTCTGTTGTGATTATGTGCCCTGTGGCTCCTCTCTGACCTTGGGCATAAGTACCACTCCCTCCCAGCCTGACACCAGCAGAAGACCCTCTTCGCCTACACTTACCACTCATACAGCATCCTCAGAATCACAGTCCTGGACCAGAGAAGAGAAAAAGACATCAGTGGATAAAAGTTACAGCTCAAGGCAAACAGTGCCATTCACTTCAAACAGCAGACTCACTTCAACTTCTATGTCGTCAGCCAGCAGCCTCCCCCTGTCCAACCCTACCTGGACTACAACATTGAAAGCGACCGACGAGAACACAATGCTTAGCTCCCGGACAACAGCAGTATTCACTTCACAAACCAGGTCCACTTCAAGGCCCAGCACAGTCACACAGCCAATCAGCAGCCCTGAGACCTCCTCCACCACCTGCCAACCCCAATGTCAGTGGACAAAGTGGATCGATGTAGACTACCCTTCATCTAGCATTAATGGAGGAGACATCGAGACATATGAGAATATCAGGGCCAATGGAGAAAAAATCTGTGAGAAGCCTCAGGACATCAGGTGTATGGCCCAGAACCACCCAGGAGTGAATGTGGACGAGTTGGGACAGAAAGTGAAGTGTGATGTCAGCTCTGGTCTGGTGTGCTACAACAAGGACCAGGGAGGCACTTTCCAGATGTGCTACAACTACCTGATCAAGGTGCTCTGTTGTAGTGTTAGCCACTGCCAGGGATCTACCACCCCTGAAGGATCGGTCTCAACGACAGAAACTGCCACCTCCACTCCCCAGACACTGTCCTCCAAGCCTCTGCCCAACACTAGTTCATTTGAGACCTGGTCTCCCTCTGGCCCTACCACCAGTATGGAAGCCTCAGAGATGCCCACCTTTTGGACCCTGAGGACAAGCGTGTCGTCCCCACCCACCACTCCTCTCACAGTCACCTCAGTGAGCACTCAGCATCCCAAGAGTCTAGAATCCTCTGGCAGCCCATCAGTGGTGACTGCCAGGTCCACCTCTCAAGGTTACTCCCTGCCTCCCAGCAGTCCCCACACTACCAATTCACTCTCAGCAACAACCTCAAAGGCTTCCTTGTCCAGCATGACAACCATCTCCACCTCCCTGACCACTCCTGGGCCCTCCAGTCCTCCTCATGGAGGCACGACCACACACCCAGTCACCACTGCCTCCACGACCAGAGCAGTCACTGAGACCCTGTCCTCAAGACCTCATACCAAGACCACCTCAGAGCTCCCTACAGTTTCCTCAGCCAGCTCCACAGCAGGACCTGGCACACAGACCTTCTCCACCACCTGCCAACCCCAATGTCAGTGGACAAAGTGGATCGATGTAGACTACCCTTCATCTAGCATTAATGGAGGAGACATCGAGACATATGAGAATATCAGGGCCAATGGAGAAAAAATCTGTGAGAAGCCTCAGGACATCAGGTGTATGGCCCAGAACTACCCCGGAGTGAATGTGGACAAGTTGGGACAGAAAGTGAAGTGTGATGTCAGCTCTGGTCTGGTGTGCTACAACAAGGACCAGGGAGGCACTTTCCCAATGTGCTACAACTACCTGATCAAGGTGCTCTGTTGTAGTGTTAGCCACTGCCAGGGATCTACCACCCCTGAAGGATCGGTCTCAACGACAGAAACTACCACCGCTACTCCCCAGACCCTGTCCTCTAAGCCTTTGCCCAACACTAGTTCAATTGAGACATGGTCTCCCTCAGGCCCTACCACCAGTATGGAAGCCTCAGAGATGCCCACCTTTTGGACCCTGAGGACAAGCGTGTCGTCCCCACCCACCACTCCTCTCACAGTCACCTCAGTGAGCACTCAGCATCCCAAGAGTCTAGAATCCTCTGGCAGCCCATCAGTGGTGACTGCCAGGTCCACCTCTCCAGGGCACTCCCAGCCTCCCAGCAGTCCCTATGCTACCAATTCACTCTCAGCAACAACCTCAAAGGCTTCTCTGTCCAGCATGACAACCATCTCCACCTCCCTGACCACTCCTGGGCCCTCCAGTCCTCCTCATGGAGGCACGACCACACACCCAGTCACCACTGCCTCTACGACCAGAGCAGTCACTGAGACCCTGTCCTCAAGACCTCATACCAAGACCACCTCAGAGCTCCCTACAGTTTCCTCAGTCAGCTCCACAGCAGGACCAGGCACACAGACTGGGTCCACTTCAAGGCCCAACACAGTCACACAGCCAGCCAGCAGCCCTGAGACCTCCTCTACCACCTGCCAACCCCAATGTCAGTGGACAAAGTGGATCGATGTAGACTACCCTTCATCTAGCATTAATGGAGGAGACATCGAGACATATGAGAATATCAGGGCCAATGGAGAAAAAATCTGTGAGAAGCCTCAGGACATCAGGTGTATGGCCCAGAACCACCCAGGAGTGAATGTGGACGAGTTGGGACAGAAAGTGAAGTGTGATGTCAGCTCTGGTCTGGTGTGCTACAACAAGGACCAGGGAGGCACTTTCCAGATGTGCTACAACTACCTGATCAAGGTGCTCTGTTGTAGTGTTAGCCACTGCCAGGGATCTACCACCCCTGAAGGATCGGTCTCAACGACAGAAACTACCACCGCTACTCCCCAGACCCTGTCCTCTAAGCCTTTGCCCAACACTAGTTCAATTGAGACATGGTCTCCCTCAGGCCCTACCACCAGTATGGAAGCCTCAGAGATGCCCACCTTTTGGACCCTGAGGACAAGCGTGTCGTCCCCACCCACCACTCCTCTCACAGTCACCTCAGTGAGCACTCAGCATCCCAAGAGTCTAGAATCCTCTGGCAGCCCATCAGTGGTGACTGCCAGGTCCACCTCTCCAGGGCACTCCCAGCCTCCCAGCAGTCCCTATGCTACCAATTCACTCTCAGCAACAACCTCAAAGGCTTCTCTGTCCAGCATGACAACCATCTCCACCTCCCTGACCACTCCTGGGCCCTCCAGTCCTCCTCATGGAGGCACGACCACACACCCAGTCACCACTGCCTCTACGACCAGAGCAGTCACTGAGACCCTGTCCTCAAGACCTCATACCAAGACCACCTCAGAGCTCCCTACAGTTTCCTCAGTCAGCTCCACAGCAGGACCAGGCACACAGACTGGGTCCACTTCAAGGCCCAACACAGTCACACAGCCAGCCAGCAGCCCTGAGACCTCCTCTACCACCTGCCAACCCCAATGTCAGTGGACAAAGTGGATCGATGTAGACTACCCTTCATCTAGCATTAATGGAGGAGACATCGAGACATATGAGAATATCAGGGCCAATGGAGAAAAAATCTGTGAGAAGCCTCAGGACATCAGGTGTATGGCCCAGAACCACCCAGGAGTGAATGTGGACGAGTTGGGACAGAAAGTGAAGTGTGATGTCAGCTCTGGTCTGGTGTGCTACAACAAGGACCAGGGAGGCACTTTCCAGATGTGCTACAACTACCTGATCAAGGTGCTCTGTTGTAGTGTTAGCCACTGCCAGCGATCTACCACCCCTGCAGGGTCGGCCCCCACAACAGGAACTGCCCCCACTGCCACTTCTGGGACTGCTACACATACTTCCTGGCCTGCGTCCAGCATGCCTACCAGTACCACAGAGTCACCTTCTTCCTCTGGAAAAACCACAATCCTTACCACAGCTTCTTCTCTAGCCACAGGCACACCCAGAGAGACTCAAACCTCATCCTTGCTAACCACTGGTCTCTCCTCAGCCCTCACAACCACAGGGACCACCTCCACAGGCTGTAAATCTCAATGCACCTGGACAGACTGGCTGGACAGTGACAAACCCCAACCTGGCCAGTTTGAAGGAGACATCGAGACCTACTATCATATTCAGAACAAGACAGGTATCAAGATATGCAAGAAACCCGTGGACATCGAGTGTGAAGCCGTCCTCTTTCCCAACATATCCTTCCAGAAGCTGGGCCAGGAGGTGGTTTGTAATGTGGACTTTGGACTCATCTGTAGAAACAGCAAGCAGAGTGACAACCAAATCTGTTTCAACTACCACATCCGTGTCCTCTGCTGTGAGGAAGATACCAGCTGTATCAGCACAACTGGACTACTGTCTACCACCTCCACATCAGCACCTGGATTTCCCAGCACAGTCTCCACGTCTACAACAAGCAAGTTGCCATCAGAGGAGCCAATACCCTCAACTTCATTCACAACTCAAAGTAGACCCTCTACCCCCAGGACAGAAAAGATTGTCTCCATTGCCACAGCTAGGACTACTGGGAGTTTCCCTGTCTCTAGTCTCTCTACCTTTCCAGCCTCTCCCACTAGCCTTCTCCCAACTTCAGAAGAGCCACATTCAGGTAAACCAAGCACAAGTTCATGGACAGCCTCCTCCAATGTTCCGAGCACTGCCAAGCCAACCACCTCCACTGGCAGACAGTTCCCTAGAACAAAAACCACATTGTGGAATAGTCTCCCTTCTAGTACCCCAACCATGGCCACCAGATCCATCCATCCCATTTCTACCACAATGACAACCAAGAACCCTCAAACACTAGTCACCAGTGACATTTCCAAAAGCAACTCTATGTTGCCTAGTAGGCCCCATATCACAGCATCTTCAGTCACATCAACAAGTGGTAGTCAGATAAGCAAGTCATACTCCTCCACCTCCCTGACCACTGCTGGGCCCTCCAGTCCTCCTCATGGAGGCACGACCACACACCCAGTCACCACTGCCTCTACGACCAGAGCAGTCACTGAGACCCTGTCCTCAAGACCTCATACCAAGACCACCTCAGAGCTCCCTACAGTTTCCTCAGTCAGCTCCACAGCAGGACCTGGCACACAGACTGGGTCCACTTCAAGGCCCAGCATAGTCACACAGCCAGTCAGCAGCCCTGAGACCTCCTCCACCACCTGCCAACCCCAATGTCAGTGGACAAGGTGGATCAATGTAGACTACCCTTCATCTAGCATTAATGGAGGAGACATCGAGACATATGAGAATATCAGGGCCAATGGAGAAAAAATCTGTGAGAAGCCTCAGGACATCAGGTGTATGGCCCAGAACTACCCAGGAGTGAATGTGGACGAGTTGGGACAGAAAGTGAAGTGTGATGTCAACTCTGGTCTGGTGTGCTACAACAAGGACCAGGGAGGCACTTTCAAGATGTGCTACAACTACCTGATCAAGGTGCTCTGTTGTAGTGTTAGCCACTGCCAGGGATCTACCACCCCTGAAGGATCGGTCTCAACGACAGAAACTGCCAGCTCCATTCCCCAGACCCTGTCCTCCAAGCCTTTGCCCAACACTAGTTCATTTGAGACCTGGTCTCCCTCTGGCCCTACCACCAGTATGGAAGCCTCAGAGATGCCCACCTTTTGGACCCTGAGGACAAGCGTGTCATCCCCACCCACCACTCCTCTCACAGTCACCTCAGTGAGCACTCAGCATCCCAAGAGTCTAGAATCCTCTGGCAGCCCATCAGTGGTGACTGCCAGGTCCACCTCTCAAGGTCACTCCCTGCCTCCCAGCAGTCCCCACACTACCAATTCACTCTCAGCAACAACCTCAAAGGCTTCTCTGTCCAGCATGACAACCATCTCCACCTCCCTGACCACTTCTGAGCCCTCCAGTCCTCCTCATGGAGGCACGACCACACACCCAGTCACCGCTGCCTCTACGACCAGAGCAGTCACTGAGACCCTGTCCTCAAGACCTCATACCAAGACCACCTCAGAGCTCCCTACAGTTCCCTCAGCCAGCTCCACAGCAGGACCTGGCACACAGACGGGGTCCACTTCAAGGCCCAGCACAGTCACACAGCCAGCCAGCAGCCCTGAGACCTCCTCTACCACCTGCCAACCCCAATGTCAGTGGACAAAGTGGATCGATGTAGACTACCCTTCATCTAGCATTAATGGAGGAGATATAGAGACATATGAGAATATCAGGACCAATGGAGAAAAAATCTGTGAGAAGCCTCAGGACATCAGGTGTATGGCCCAGAACCACCCCGGAGTGAATGTGGACGAGTTGGGACAGAAAGTGAAGTGTGATGTCAACTCTGGTCTGGTGTGCTACAACAAGGACCAGGGAGGCACTTTCCAGATGTGCTACAACTACCTGATCAAGGTGCTCTGTTGTAGTGTTAGCCACTGCCAGGGATCTACCACCACTCCAGGGTCGGCCCCAATGACAGGATCAGCAACTACTGCCACTCAGACCCTGAGTTCTATGCCTCTTCCCAACACTAGTCTGACCGTGACCAGTCCTCACTCGGCCTCCACCACAGCAGCAACAAGCATCACGGAAACCAGCAGCCCAAGGAGCGTCTCCTCAATTCATACAACACCCAAGATCTTTCCTGAGACATTACAGTCGACGACTGGCTTGACAACACAGCAAACGTCGTCAACTGGAATCTGGACAAGTATGCTTACGGGTACAGCTGGCACTGTCTCCTCAACATCTCTGTCCACCAGCCTAGAGTCTACTACAGGCATAACAGAGGTGTCCACCAGTATGCCCATGACATCTACCCTACCAGTAACTGTGACTAATGCTACTACCCCCCAGGGCACAACACTCTGCCAACCCAAGTGTAAGTGGACTGAATGGTTTGATGTGGATTCACCGACCTCGGGATCGGTAAAAGGGGACATGGAAACCTATGAGAACATCAGGGCCTCTGGTAAGACCTTGTGCCAGGCACCAGAGAAAATTGAGTGTCGGGCAGAGAACTACCCTGCAGTGAGCATTGATAAGGTTGGCCAAGTAGTAAGCTGCAACCTAGAAACGGGGCTGGTCTGCAAAAATGAAGACCAGAAAGATGATTTCAAAATGTGCTTTAACTACAATATACGTGTGCTTTGCTGTGATGACTATAGCCACTGTCCTACTACCACTTACACCACCATCAAGTCTCCCCTGGCCCCTTTCACAACCTCAGTGTCCTCGAGCATGGAGTCCACCTTTCAGACTAACCGTCCTGCCAGCCCTTCAGGGCCAAGCACCCAAGCATCCACATGGTCTACACTTCCTGACTCAGGCTGTACACCTCGCTGCAAATGGACAGAGTGGTTTGACGCAGACTACCCTAACCCCGGCCCCAGAGGCGGGGACTTTGAGGTCTATGCAGTATTTCGTGAGGTTGGCTACATCTTCTGCGATCAGCCCAAGGACATCGAGTGCCGTTCAGAGAAGGAGCCAGACAGGCCCCTGGAAACTCTAGAGCAGGTGGTCCAGTGTGATGTGCGATTTGGGCTGATATGCAAAAATATCAACCAATCGGGACCTTTGCAGTATTGTGACAACTACCACGTGCGCCTCCTCTGCTGTGATAACTATAGCCACTGTACCTCGTCACCCATGGCCACCATGTCCACTGCTCTTTCTTCCTCTCACCTGCCATCTACTCACACTTCCCTGGCTTTGAATACCACGACTTTTTTCCCCGGACTCAGTAGTTCCAGTGAGCCCCACTCCTCTTCCCTGATGTCTACTCACACCTCCACAATGTTGACCACTGAGACTTCACCTATAGCCACTGGCCCCACTGTGGCCCCATCCTCAACCTCAGGGACCCCTTACACCCCCAAAGTTTCCCCCAGCAGCCAGGTGACCTTCAGTGTGTCTACTGCTTTTTCCTCCGTCTTCAGTACCCCCAGGCCTGTCTTTTCCAGCCATGCATCTTCCCCATCACCCTGTTTCTGTCAGGCATTTGGGCAACTGTTCTTACCTG
Seq A exon
GTGAGTAGACAAGCCCATGTCCTCCCTACCCTATGTCCCCTGTCAGTTTTCAGAGCTATGAGCCCCCAGGCTACCCCTCAGACCCTATACCTCCTCCCCCTGGCACTAGCCTGCCTCTTTAGCTGGGGTGTCGCTATGTTTTATTGTGCTCTTTCCCTCACAG
Seq C2 exon
GGGATATCATCTACAATAAGACTGATGGAGCTGGCTGCCAATTCTATGCCATCTGCAACCAGTATTGTGATGTTGACCGCTTCCAGGGTACCTGCCCCTCCTCTTCACCTCCAATGTCCTCTACCACTGTACCTTTGCCTCCCCTGCTTCCTGGCTGTGATAATGCTATCCCTCCCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066108:ENSMUST00000165147:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.570 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF133301=Mucin2_WxxW=WD(100=3.3),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTCAGGGACCCCTTACA
R:
CTGGAAGCGGTCAACATCACA
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types