Special

MmuINT0102471 @ mm9

Intron Retention

Gene
Description
mucin 5, subtype B, tracheobronchial [Source:MGI Symbol;Acc:MGI:1921430]
Coordinates
chr7:149043212-149051575:+
Coord C1 exon
chr7:149043212-149051230
Coord A exon
chr7:149051231-149051393
Coord C2 exon
chr7:149051394-149051575
Length
163 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTGTGCTCTTTCCCTCACAGGGG
3' ss Score
11.86
Exon sequences
Seq C1 exon
GCTCAGCTTCCACTGTGTCTACCGTGTGTGTTCATGAGGTCTGCCAATGGTCCATTTGGTATGATGAGAGCCATCCAGAGGCTGGCATGTCAGGCGGGGACTTTGAAACATTTGAGAACCTGAGGAAGAAGGGGCACCAGGTGTGTCAAACCCCCGTTGGCATCGAATGCCGTGCAGTGAAATTCCCTAGCATGGACTTAGAGAAGCTGGGTCAGAAGGTCAACTGTGACCCATCCTCTGGGCTGAGTTGCTTCAACAGTGAACAGAGCCCCCCGCTGTGCCACGACTATGAGCTGAGGGTTCTCTGTTGTGATTATGTGCCCTGTGGCTCCTCTCTGACCTTGGGCATAAGTACCACTCCCTCCCAGCCTGACACCAGCAGAAGACCCTCTTCGCCTACACTTACCACTCATACAGCATCCTCAGAATCACAGTCCTGGACCAGAGAAGAGAAAAAGACATCAGTGGATAAAAGTTACAGCTCAAGGCAAACAGTGCCATTCACTTCAAACAGCAGACTCACTTCAACTTCTATGTCGTCAGCCAGCAGCCTCCCCCTGTCCAACCCTACCTGGACTACAACATTGAAAGCGACCGACGAGAACACAATGCTTAGCTCCCGGACAACAGCAGTATTCACTTCACAAACCAGGTCCACTTCAAGGCCCAGCACAGTCACACAGCCAATCAGCAGCCCTGAGACCTCCTCCACCACCTGCCAACCCCAATGTCAGTGGACAAAGTGGATCGATGTAGACTACCCTTCATCTAGCATTAATGGAGGAGACATCGAGACATATGAGAATATCAGGGCCAATGGAGAAAAAATCTGTGAGAAGCCTCAGGACATCAGGTGTATGGCCCAGAACCACCCAGGAGTGAATGTGGACGAGTTGGGACAGAAAGTGAAGTGTGATGTCAGCTCTGGTCTGGTGTGCTACAACAAGGACCAGGGAGGCACTTTCCAGATGTGCTACAACTACCTGATCAAGGTGCTCTGTTGTAGTGTTAGCCACTGCCAGGGATCTACCACCCCTGAAGGATCGGTCTCAACGACAGAAACTGCCACCTCCACTCCCCAGACACTGTCCTCCAAGCCTCTGCCCAACACTAGTTCATTTGAGACCTGGTCTCCCTCTGGCCCTACCACCAGTATGGAAGCCTCAGAGATGCCCACCTTTTGGACCCTGAGGACAAGCGTGTCGTCCCCACCCACCACTCCTCTCACAGTCACCTCAGTGAGCACTCAGCATCCCAAGAGTCTAGAATCCTCTGGCAGCCCATCAGTGGTGACTGCCAGGTCCACCTCTCAAGGTTACTCCCTGCCTCCCAGCAGTCCCCACACTACCAATTCACTCTCAGCAACAACCTCAAAGGCTTCCTTGTCCAGCATGACAACCATCTCCACCTCCCTGACCACTCCTGGGCCCTCCAGTCCTCCTCATGGAGGCACGACCACACACCCAGTCACCACTGCCTCCACGACCAGAGCAGTCACTGAGACCCTGTCCTCAAGACCTCATACCAAGACCACCTCAGAGCTCCCTACAGTTTCCTCAGCCAGCTCCACAGCAGGACCTGGCACACAGACCTTCTCCACCACCTGCCAACCCCAATGTCAGTGGACAAAGTGGATCGATGTAGACTACCCTTCATCTAGCATTAATGGAGGAGACATCGAGACATATGAGAATATCAGGGCCAATGGAGAAAAAATCTGTGAGAAGCCTCAGGACATCAGGTGTATGGCCCAGAACTACCCCGGAGTGAATGTGGACAAGTTGGGACAGAAAGTGAAGTGTGATGTCAGCTCTGGTCTGGTGTGCTACAACAAGGACCAGGGAGGCACTTTCCCAATGTGCTACAACTACCTGATCAAGGTGCTCTGTTGTAGTGTTAGCCACTGCCAGGGATCTACCACCCCTGAAGGATCGGTCTCAACGACAGAAACTACCACCGCTACTCCCCAGACCCTGTCCTCTAAGCCTTTGCCCAACACTAGTTCAATTGAGACATGGTCTCCCTCAGGCCCTACCACCAGTATGGAAGCCTCAGAGATGCCCACCTTTTGGACCCTGAGGACAAGCGTGTCGTCCCCACCCACCACTCCTCTCACAGTCACCTCAGTGAGCACTCAGCATCCCAAGAGTCTAGAATCCTCTGGCAGCCCATCAGTGGTGACTGCCAGGTCCACCTCTCCAGGGCACTCCCAGCCTCCCAGCAGTCCCTATGCTACCAATTCACTCTCAGCAACAACCTCAAAGGCTTCTCTGTCCAGCATGACAACCATCTCCACCTCCCTGACCACTCCTGGGCCCTCCAGTCCTCCTCATGGAGGCACGACCACACACCCAGTCACCACTGCCTCTACGACCAGAGCAGTCACTGAGACCCTGTCCTCAAGACCTCATACCAAGACCACCTCAGAGCTCCCTACAGTTTCCTCAGTCAGCTCCACAGCAGGACCAGGCACACAGACTGGGTCCACTTCAAGGCCCAACACAGTCACACAGCCAGCCAGCAGCCCTGAGACCTCCTCTACCACCTGCCAACCCCAATGTCAGTGGACAAAGTGGATCGATGTAGACTACCCTTCATCTAGCATTAATGGAGGAGACATCGAGACATATGAGAATATCAGGGCCAATGGAGAAAAAATCTGTGAGAAGCCTCAGGACATCAGGTGTATGGCCCAGAACCACCCAGGAGTGAATGTGGACGAGTTGGGACAGAAAGTGAAGTGTGATGTCAGCTCTGGTCTGGTGTGCTACAACAAGGACCAGGGAGGCACTTTCCAGATGTGCTACAACTACCTGATCAAGGTGCTCTGTTGTAGTGTTAGCCACTGCCAGGGATCTACCACCCCTGAAGGATCGGTCTCAACGACAGAAACTACCACCGCTACTCCCCAGACCCTGTCCTCTAAGCCTTTGCCCAACACTAGTTCAATTGAGACATGGTCTCCCTCAGGCCCTACCACCAGTATGGAAGCCTCAGAGATGCCCACCTTTTGGACCCTGAGGACAAGCGTGTCGTCCCCACCCACCACTCCTCTCACAGTCACCTCAGTGAGCACTCAGCATCCCAAGAGTCTAGAATCCTCTGGCAGCCCATCAGTGGTGACTGCCAGGTCCACCTCTCCAGGGCACTCCCAGCCTCCCAGCAGTCCCTATGCTACCAATTCACTCTCAGCAACAACCTCAAAGGCTTCTCTGTCCAGCATGACAACCATCTCCACCTCCCTGACCACTCCTGGGCCCTCCAGTCCTCCTCATGGAGGCACGACCACACACCCAGTCACCACTGCCTCTACGACCAGAGCAGTCACTGAGACCCTGTCCTCAAGACCTCATACCAAGACCACCTCAGAGCTCCCTACAGTTTCCTCAGTCAGCTCCACAGCAGGACCAGGCACACAGACTGGGTCCACTTCAAGGCCCAACACAGTCACACAGCCAGCCAGCAGCCCTGAGACCTCCTCTACCACCTGCCAACCCCAATGTCAGTGGACAAAGTGGATCGATGTAGACTACCCTTCATCTAGCATTAATGGAGGAGACATCGAGACATATGAGAATATCAGGGCCAATGGAGAAAAAATCTGTGAGAAGCCTCAGGACATCAGGTGTATGGCCCAGAACCACCCAGGAGTGAATGTGGACGAGTTGGGACAGAAAGTGAAGTGTGATGTCAGCTCTGGTCTGGTGTGCTACAACAAGGACCAGGGAGGCACTTTCCAGATGTGCTACAACTACCTGATCAAGGTGCTCTGTTGTAGTGTTAGCCACTGCCAGCGATCTACCACCCCTGCAGGGTCGGCCCCCACAACAGGAACTGCCCCCACTGCCACTTCTGGGACTGCTACACATACTTCCTGGCCTGCGTCCAGCATGCCTACCAGTACCACAGAGTCACCTTCTTCCTCTGGAAAAACCACAATCCTTACCACAGCTTCTTCTCTAGCCACAGGCACACCCAGAGAGACTCAAACCTCATCCTTGCTAACCACTGGTCTCTCCTCAGCCCTCACAACCACAGGGACCACCTCCACAGGCTGTAAATCTCAATGCACCTGGACAGACTGGCTGGACAGTGACAAACCCCAACCTGGCCAGTTTGAAGGAGACATCGAGACCTACTATCATATTCAGAACAAGACAGGTATCAAGATATGCAAGAAACCCGTGGACATCGAGTGTGAAGCCGTCCTCTTTCCCAACATATCCTTCCAGAAGCTGGGCCAGGAGGTGGTTTGTAATGTGGACTTTGGACTCATCTGTAGAAACAGCAAGCAGAGTGACAACCAAATCTGTTTCAACTACCACATCCGTGTCCTCTGCTGTGAGGAAGATACCAGCTGTATCAGCACAACTGGACTACTGTCTACCACCTCCACATCAGCACCTGGATTTCCCAGCACAGTCTCCACGTCTACAACAAGCAAGTTGCCATCAGAGGAGCCAATACCCTCAACTTCATTCACAACTCAAAGTAGACCCTCTACCCCCAGGACAGAAAAGATTGTCTCCATTGCCACAGCTAGGACTACTGGGAGTTTCCCTGTCTCTAGTCTCTCTACCTTTCCAGCCTCTCCCACTAGCCTTCTCCCAACTTCAGAAGAGCCACATTCAGGTAAACCAAGCACAAGTTCATGGACAGCCTCCTCCAATGTTCCGAGCACTGCCAAGCCAACCACCTCCACTGGCAGACAGTTCCCTAGAACAAAAACCACATTGTGGAATAGTCTCCCTTCTAGTACCCCAACCATGGCCACCAGATCCATCCATCCCATTTCTACCACAATGACAACCAAGAACCCTCAAACACTAGTCACCAGTGACATTTCCAAAAGCAACTCTATGTTGCCTAGTAGGCCCCATATCACAGCATCTTCAGTCACATCAACAAGTGGTAGTCAGATAAGCAAGTCATACTCCTCCACCTCCCTGACCACTGCTGGGCCCTCCAGTCCTCCTCATGGAGGCACGACCACACACCCAGTCACCACTGCCTCTACGACCAGAGCAGTCACTGAGACCCTGTCCTCAAGACCTCATACCAAGACCACCTCAGAGCTCCCTACAGTTTCCTCAGTCAGCTCCACAGCAGGACCTGGCACACAGACTGGGTCCACTTCAAGGCCCAGCATAGTCACACAGCCAGTCAGCAGCCCTGAGACCTCCTCCACCACCTGCCAACCCCAATGTCAGTGGACAAGGTGGATCAATGTAGACTACCCTTCATCTAGCATTAATGGAGGAGACATCGAGACATATGAGAATATCAGGGCCAATGGAGAAAAAATCTGTGAGAAGCCTCAGGACATCAGGTGTATGGCCCAGAACTACCCAGGAGTGAATGTGGACGAGTTGGGACAGAAAGTGAAGTGTGATGTCAACTCTGGTCTGGTGTGCTACAACAAGGACCAGGGAGGCACTTTCAAGATGTGCTACAACTACCTGATCAAGGTGCTCTGTTGTAGTGTTAGCCACTGCCAGGGATCTACCACCCCTGAAGGATCGGTCTCAACGACAGAAACTGCCAGCTCCATTCCCCAGACCCTGTCCTCCAAGCCTTTGCCCAACACTAGTTCATTTGAGACCTGGTCTCCCTCTGGCCCTACCACCAGTATGGAAGCCTCAGAGATGCCCACCTTTTGGACCCTGAGGACAAGCGTGTCATCCCCACCCACCACTCCTCTCACAGTCACCTCAGTGAGCACTCAGCATCCCAAGAGTCTAGAATCCTCTGGCAGCCCATCAGTGGTGACTGCCAGGTCCACCTCTCAAGGTCACTCCCTGCCTCCCAGCAGTCCCCACACTACCAATTCACTCTCAGCAACAACCTCAAAGGCTTCTCTGTCCAGCATGACAACCATCTCCACCTCCCTGACCACTTCTGAGCCCTCCAGTCCTCCTCATGGAGGCACGACCACACACCCAGTCACCGCTGCCTCTACGACCAGAGCAGTCACTGAGACCCTGTCCTCAAGACCTCATACCAAGACCACCTCAGAGCTCCCTACAGTTCCCTCAGCCAGCTCCACAGCAGGACCTGGCACACAGACGGGGTCCACTTCAAGGCCCAGCACAGTCACACAGCCAGCCAGCAGCCCTGAGACCTCCTCTACCACCTGCCAACCCCAATGTCAGTGGACAAAGTGGATCGATGTAGACTACCCTTCATCTAGCATTAATGGAGGAGATATAGAGACATATGAGAATATCAGGACCAATGGAGAAAAAATCTGTGAGAAGCCTCAGGACATCAGGTGTATGGCCCAGAACCACCCCGGAGTGAATGTGGACGAGTTGGGACAGAAAGTGAAGTGTGATGTCAACTCTGGTCTGGTGTGCTACAACAAGGACCAGGGAGGCACTTTCCAGATGTGCTACAACTACCTGATCAAGGTGCTCTGTTGTAGTGTTAGCCACTGCCAGGGATCTACCACCACTCCAGGGTCGGCCCCAATGACAGGATCAGCAACTACTGCCACTCAGACCCTGAGTTCTATGCCTCTTCCCAACACTAGTCTGACCGTGACCAGTCCTCACTCGGCCTCCACCACAGCAGCAACAAGCATCACGGAAACCAGCAGCCCAAGGAGCGTCTCCTCAATTCATACAACACCCAAGATCTTTCCTGAGACATTACAGTCGACGACTGGCTTGACAACACAGCAAACGTCGTCAACTGGAATCTGGACAAGTATGCTTACGGGTACAGCTGGCACTGTCTCCTCAACATCTCTGTCCACCAGCCTAGAGTCTACTACAGGCATAACAGAGGTGTCCACCAGTATGCCCATGACATCTACCCTACCAGTAACTGTGACTAATGCTACTACCCCCCAGGGCACAACACTCTGCCAACCCAAGTGTAAGTGGACTGAATGGTTTGATGTGGATTCACCGACCTCGGGATCGGTAAAAGGGGACATGGAAACCTATGAGAACATCAGGGCCTCTGGTAAGACCTTGTGCCAGGCACCAGAGAAAATTGAGTGTCGGGCAGAGAACTACCCTGCAGTGAGCATTGATAAGGTTGGCCAAGTAGTAAGCTGCAACCTAGAAACGGGGCTGGTCTGCAAAAATGAAGACCAGAAAGATGATTTCAAAATGTGCTTTAACTACAATATACGTGTGCTTTGCTGTGATGACTATAGCCACTGTCCTACTACCACTTACACCACCATCAAGTCTCCCCTGGCCCCTTTCACAACCTCAGTGTCCTCGAGCATGGAGTCCACCTTTCAGACTAACCGTCCTGCCAGCCCTTCAGGGCCAAGCACCCAAGCATCCACATGGTCTACACTTCCTGACTCAGGCTGTACACCTCGCTGCAAATGGACAGAGTGGTTTGACGCAGACTACCCTAACCCCGGCCCCAGAGGCGGGGACTTTGAGGTCTATGCAGTATTTCGTGAGGTTGGCTACATCTTCTGCGATCAGCCCAAGGACATCGAGTGCCGTTCAGAGAAGGAGCCAGACAGGCCCCTGGAAACTCTAGAGCAGGTGGTCCAGTGTGATGTGCGATTTGGGCTGATATGCAAAAATATCAACCAATCGGGACCTTTGCAGTATTGTGACAACTACCACGTGCGCCTCCTCTGCTGTGATAACTATAGCCACTGTACCTCGTCACCCATGGCCACCATGTCCACTGCTCTTTCTTCCTCTCACCTGCCATCTACTCACACTTCCCTGGCTTTGAATACCACGACTTTTTTCCCCGGACTCAGTAGTTCCAGTGAGCCCCACTCCTCTTCCCTGATGTCTACTCACACCTCCACAATGTTGACCACTGAGACTTCACCTATAGCCACTGGCCCCACTGTGGCCCCATCCTCAACCTCAGGGACCCCTTACACCCCCAAAGTTTCCCCCAGCAGCCAGGTGACCTTCAGTGTGTCTACTGCTTTTTCCTCCGTCTTCAGTACCCCCAGGCCTGTCTTTTCCAGCCATGCATCTTCCCCATCACCCTGTTTCTGTCAGGCATTTGGGCAACTGTTCTTACCTG
Seq A exon
GTGAGTAGACAAGCCCATGTCCTCCCTACCCTATGTCCCCTGTCAGTTTTCAGAGCTATGAGCCCCCAGGCTACCCCTCAGACCCTATACCTCCTCCCCCTGGCACTAGCCTGCCTCTTTAGCTGGGGTGTCGCTATGTTTTATTGTGCTCTTTCCCTCACAG
Seq C2 exon
GGGATATCATCTACAATAAGACTGATGGAGCTGGCTGCCAATTCTATGCCATCTGCAACCAGTATTGTGATGTTGACCGCTTCCAGGGTACCTGCCCCTCCTCTTCACCTCCAATGTCCTCTACCACTGTACCTTTGCCTCCCCTGCTTCCTGGCTGTGATAATGCTATCCCTCCCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066108-Muc5b:NM_028801:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.568 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF133301=Mucin2_WxxW=WD(100=3.3),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4),PF133301=Mucin2_WxxW=WD(100=3.4)
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTCAGGGACCCCTTACA
R:
CTGGAAGCGGTCAACATCACA
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types