DreINT0099171 @ danRer10
Intron Retention
Gene
ENSDARG00000104248 | muc5a
Description
mucin 5a [Source:ZFIN;Acc:ZDB-GENE-110914-165]
Coordinates
chr25:8092383-8094758:+
Coord C1 exon
chr25:8092383-8092494
Coord A exon
chr25:8092495-8094670
Coord C2 exon
chr25:8094671-8094758
Length
2176 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
GTCCACTATTTCATTTACAGATT
3' ss Score
8.92
Exon sequences
Seq C1 exon
GGTGTACGATTCAACCTATAAGGATGGAATTACCATTGAGCTGAGCCCAAATGTTAAGATTTCCAACAAACATGGAGTGTCTGTCTTTTGGGAGAAGGACAGATCGTTTTTG
Seq A exon
GTATGTTTATTATTGTCTGTTATGTTTGAATGCACTCTTAACACAACTAGTTGACATTAAATTGTGTGGAAACCTATTGCCTTAAACGTGTTAAGTGGTTAGTTGAAACTTATCAGCTCTAGTTTAGTTAACATAGAACTACATAGAACAAGGATGTCAAACTCAATTCCTGGAGGGCCACAGCCCTGCACAGTTTAGTTCCAACCCTAATCAAACACACCTGATCAAACTAATTGAGTCCTTCAGGCTTGTTTGAAACCTACAGGTAAGTGTGTTGGAGCAGGGTTGGAACTAAACTATGCAGGGCTGCTGCCCTCAAGGAATTAAGTTCGACAACCCTGACATAGAACCATATGTTAATTTAACCATTTAGCTTGTTACTTTCAACAACTTAAGTGGTTTCAGTTATTGGGTTTCCACACAATTTTCTAGTAAAGTCAACAATTTGGGTTAAGTGTACTGTATTTAGTATGCAAAATTGTACGTTAGGATAAATAAGGTCTGCCTTCAGTCATCTAAGTGTCTTGTAACATTTCCAAACCATGACCGTGAATTAAAAAGTGCTTTTAAAAGATCAATTTTACTGTAAAAGAACAGGATTGGAAAGGGCTAACACAGTAATTTTATTAATAAACTGCAAGTTCAAGTATTCTGGGAAACTTCTACTCCGCTAAATTATATACATGTTGGGAAAAAAGTTATTCAAAACTCGATAAATCATTGTCTGCAAAGACATGTAACGGTGGTGTTTAATATTTGAACGAACTGAATATTTTCAGTTAACATGCTTATTTCTTTTGCACTCAACTTATGTCATTTAGACTAATGGCGAAATGTATGATCTGTAGTAATGTAAATAAAATTTAAGAATTTAGTAGTATTGTGAATAACAATCAACTTGAGGTCACATTTCTTAATTGTTTGTGAAGGATATCTGCTGTAAATTCAAGGTGTTAAAGTTCACCGTAGGACATGTTTGGATGTGGAAATGTCTAGAGTTTTGTATTACTGTGTAAACACAGAAGGTTTATTTAAAATACCATCTATAAGTGCTCACGCATTTTCCACAGTACATGATAAGTATTAAATAGTTGCCCATGTTTGCATACAGTTATTTTTAAAAGAAACAATTTTGTTCTGTGATGCCTGTTTTTTTTATTGTGTGTTTATATTTGTCAGGACACAATTAGAAACATTTTGTTTCTACTCTTTACTTTCAAGATCATAAAAAAATCAAGTTCTTCTGTACTTTGAGTCACGATTAAATTAAGTCTTTTGTGTCTCCAGAATGTGTTAAAATAGGTTATCAGATCATTGAATACACATGTGGTATAATAAATGATCTGAATACACTTCCTGTATTCCTGAAGTCTTAGCACTCATCAATTCCTGCCACAGCTGGCAGCAATAGACACTGATACACACACAGCTGAAGCTCATCTTTACTGATTACATGGACTAACTTTCCCATACACTTTGCTGAGTCTTGTTTAGCTGTTGCATTTGATTCAAAGCGGTTTCCTTGTTTCTTATTATCCCGTATTTTGACTTTTTGGTATGTTTGGTTTGTTTATCGTGTTTTTTGATGCTTTGCCGCCTGTTTTAAACCTTTGCCTGTCTTATTTCGAAATACGCTTTTGGATTATCTATTGCACTGTATTTACTGGGTTTTGACTCCTGCCTGTCTGACCATTCTCAAAGCTGCATTTGGAACTACCCTTGTCTGCACCTTCGTAACTTCTGGGAGTTGTAGTTTGGTAGGAATATAGGAAGTGATCTTCAGCAGAGGCAACATTGCTGGCGATCGCAGTAATACCCCGTTGAAAATGTAAATTTTTTTTTTCAGTCAGAGTAAATTTTAGCTGTTTTGCACCAGAGCCTTTGAATGAAAATAAACTGGCACTCCCTGCCCCCTCTTCAGGCATGTCTTTAGAATAATATACCCACCATTAATTGTCAGATAAACACAGCACAATGACAGACATAGACTACTAAGTACCAAAAGAGCCAAAGTGCCAAATACCAAAGTCAGACTGAATCAGGAAGTTTCCCTTTGGTTATTTGTGATGATTGCTATTGTGGATTTTATTCAGCCTTTCTGCAACAATGAATGAGCCACACAGAAATGTTGCAAGTTTTACACAAGTCCTTGATTTGTCCACTATTTCATTTACAG
Seq C2 exon
ATTGAGCTTTCAGAAAAGTACAAAGAAAAGACCTGTGGACTATGTGGAAACTTCAATGGTGACAAGTCTGATGATGCCTTTAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104248:ENSDART00000162129:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(25.5=100)
A:
NA
C2:
PF0009420=VWD=FE(20.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]