RnoINT0000831 @ rn6
Intron Retention
Gene
ENSRNOG00000046602 | AABR07006030.1
Description
NA
Coordinates
chr1:214666626-214667234:+
Coord C1 exon
chr1:214666626-214666740
Coord A exon
chr1:214666741-214667143
Coord C2 exon
chr1:214667144-214667234
Length
403 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
CTTCCCTTCTTCTCCAACAGGTG
3' ss Score
13.53
Exon sequences
Seq C1 exon
GGTCAGCACCCCACACTACAGCTCCGGGCTGCTCATTGAGAAGAACGATGCTTATACCAAGGTCTACTCCCGTGCTGGCCTCTCCCTCATGTGGAACCGGGAAGATGCCCTGATG
Seq A exon
GTGGGTACCAGCATCCTGGGCTCTGGGGTGGTAGGACTCCTCTGTCTGGCTAGAGGCCTGGTGGCTCCATAGAAGGGCAGAAGGGTGGGAGACCCATACCTCATGATTGGAGTAGGATCCTGTGTGGTAGAGAAGGTTGCCGGAGATGGTGATTAGTACCAGAGACTCCACTATCCTGTCCTGAGAGAGCTCTGCTCTCTGTGTTATAGGTGCAGTGAGCTGTCTCTAAGTGTCCTTCAGAGATGGCCATTTTGGTACTCTATGCTGAAGTATCTTTCTAGTGGCTGACCCCTGCCTTCTTCCCAAGCTGCCCTGTTTGAAAAGCTGCCTAGACTTAGGGGCTCTCTGGAAGATGTGCTGGGCTCTGAGGTCTGCTCACCTGCCTTCCCTTCTTCTCCAACAG
Seq C2 exon
GTGGAGCTGGACGGCCGGTTCCAGAACCACACCTGTGGTCTCTGTGGGGACTTCAATGGCATGCAGGCCAATAATGAGTTCCTCTCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046602:ENSRNOT00000075002:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(25.3=100)
A:
NA
C2:
PF0009420=VWD=FE(20.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGCACCCCACACTACAG
R:
AGGAACTCATTATTGGCCTGCA
Band lengths:
198-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]