GgaINT1001067 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14363581-14364483:-
Coord C1 exon
chr5:14364369-14364483
Coord A exon
chr5:14363672-14364368
Coord C2 exon
chr5:14363581-14363671
Length
697 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TTTTCCTTTCCATTACCTAGGTG
3' ss Score
9.68
Exon sequences
Seq C1 exon
TGTCAAGACACCCTACTACAGCTCTGGTTTGCTCATTGAGAGCAATGACATTTATACCAAGGTTTATGCTAAACTAGGCCTAATTCTGATATGGAATCAGGAAGATGCACTGATG
Seq A exon
GTATGTAAAATCAATTTATTTTTAATTAGCATTTCCTGGGTTTAACAGACCACTGTAGGCTGAACAGAAGTAGAATTTCATGGACTGAACTGAACTAGACTGTTAGACTTACTCATCCAGCTGGTACTGTATATAACTTTAAAAAGGTAAAATTCCTGTCTCTGCAATGTGACAGAGTTAGTAATATGGGGTGCAGGTGATCTTACTACTCAAAAGAAAGGGAGAAGCAGATTTCTGAAAAGTAGCTAATGCTTTTGCTGTAACACCCTCACAATATGATCATTTTCTTTCATATGTCTTTTAGAAGACTGCCATCATCTGCTTGCCTAATTTCCAGCATGGCTTAAATTTTATCCCAGCGGATTAAAAAAAAAAGGGGAAAAAAGTACTGAAATTTACGGAATGTTTTCCTGTTTGACTTTATCACCATATCACCATGGTGTTTGTAAAATAAAGAATCTTTAGACCCCCCCCCCCTTTTTTTCTTTTTTCTTTTTTGTGTTACGTTTTTGCATCCAATTGTTTGTTTCTTAACTGTTACAAACTAATTTGCAGTGAAGAAGCAAATTCTGGGAGTGTTTTGGATTTGCTGTCCAATCTCTCACTTAGCAACTTCCCTTTCAATTAAACATACCTACTTTGGAAGGTCTTCATGTTCCAGATAATTCTTCTTTTTTTTTTCCTTTCCATTACCTAG
Seq C2 exon
GTGGAGCTGGACAGCAAGTTTGGTAACCAGACATGTGGTCTCTGTGGGGATTACAATGGAGTTCCAATCTACAATGAGTTTATTAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(26.2=100)
A:
NA
C2:
PF0009420=VWD=PD(18.6=87.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAGACACCCTACTACAGCT
R:
ATAAACTCATTGTAGATTGGAACTCC
Band lengths:
198-895
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]