HsaINT1023905 @ hg38
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7512]
Coordinates
chr11:1077454-1078042:+
Coord C1 exon
chr11:1077454-1077568
Coord A exon
chr11:1077569-1077951
Coord C2 exon
chr11:1077952-1078042
Length
383 bp
Sequences
Splice sites
5' ss Seq
ATGGTGCTC
5' ss Score
-0.86
3' ss Seq
CCTGCTCCCTCCCGCAACAGCTG
3' ss Score
8.52
Exon sequences
Seq C1 exon
GGTCAGCACCCCGCACTACAGCCCCGGGCTGCTCATTGAGAAGAGCGATGCCTACACCAAAGTCTACTCCCGCGCCGGCCTCACCCTCATGTGGAACCGGGAGGATGCACTCATG
Seq A exon
GTGCTCAGGGGTCCCCGGACTCGTGGGGCTGGTGGGGGCTCCGTCAGGCCTCTGGGCAGACCCCAAGGGAGGGCAGGGAGGGCAGTGCTCTGACCCCTCACCGAGAGGGCATGGGTGGGGCAGGGCCTCGGCAGCGCAGGGCGTCGGTGCTGGACTTGGGGGGCAGCAGCAGAAGCCGACCTGGCCCTGACCCCCCCAGGCCTCAGCCTTCCCCCAAACGCACTCGGCTTCTCAGGGACCTGCCCTGCCAGGCCGCTCCCTGGCTGCTGACCCCAGCCTTCCTGCCCCACCTTCCTCTGGCTCAAACAAGCCACGAGTCTTGGGGGTTCCTGGCGGCTGTGGGCCGGGCGGGAGGCCAGCTCACCTGCTCCCTCCCGCAACAG
Seq C2 exon
CTGGAGCTGGACACTAAGTTCCGGAACCACACCTGTGGCCTCTGCGGGGACTACAACGGCCTGCAGAGCTATTCAGAATTCCTCTCTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788:ENST00000361558:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGCACCCCGCACTA
R:
AGGAATTCTGAATAGCTCTGCAGG
Band lengths:
198-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains