DreINT0099741 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7481055-7481596:+
Coord C1 exon
chr6:7481055-7481159
Coord A exon
chr6:7481160-7481443
Coord C2 exon
chr6:7481444-7481596
Length
284 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
GTGTGTGTGTGTGTGTGTAGGAG
3' ss Score
8.74
Exon sequences
Seq C1 exon
ACGGAACTGGACAATGTTTCATGCCTTTTAGAAGATGCCGAGAAGAAGGGAATCAAACTGACCAAAGACGTCTCCAGTCTAGAGAGTCAGCTTCAGGATACTCAG
Seq A exon
GTAAAGTGTCTCTGACCACAGGACATCCACTTGCTAAATCTACTTTCTAATGTACAAGATTGATGCTCATTATGTTCCAGCATGTACTTCACTGTTGAACCTGCAATAGAAAAGACTGCACAGAACTAATGCAAACCGTTTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGTGTGTGTAG
Seq C2 exon
GAGTTGCTTCAAGAGGAGACGCGTCAGAAGCTGAACCTGAGCAGCCGTATTCGTCAGCTGGAGGAGGAGAAAAACAATCTTTTGGAGCAGCAGGAGGAGGAAGAGGAGTCACGAAAGAACCTAGAGAAACAACTGGCAACACTACAAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAACTGGACAATGTTTCATGC
R:
GGGCTTGTAGTGTTGCCAGTT
Band lengths:
255-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]