GgaINT0127260 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1698425-1699693:-
Coord C1 exon
chr18:1699589-1699693
Coord A exon
chr18:1698578-1699588
Coord C2 exon
chr18:1698425-1698577
Length
1011 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TATGCCTGTTTGTGTGACAGGAA
3' ss Score
9.67
Exon sequences
Seq C1 exon
AATGAGTTGGATAATGTCTCAAGTCTCCTGGAGGAAGCAGAGAAGAAAGGGATCAAGTTTGCCAAGGATGCAGCTAGTTTGGAATCCCAACTTCAGGATACACAG
Seq A exon
GTGTGTGTGCAGGGAAGCTTGAAATCTGCACTTGAGCTTTGTTTCTTACCAAACTGCTAACTGCAGAGCAGAAAATACATTTTCATTCATGGCTTTGAAAGTCCATTGAGTAGAATCTGTACTTCCTCTTTGTGTCTAGTGAAATATGATGTATAAATGACTGCTCAGCTATGTGTGAGGCCAGTTTGTCTTTGATATTTGATGATAGTATTTGATAGACAGTAACTTTTCAGTTTCTCTTCTATTTTATAGTCTGTGGGAGATAAGTATTTAGTCAGGAAGAGCTCTTCCAAGTAGAATGTTAATGTGAATGAGATTCTTGAAGTATACGGAAGGTACCTCAAGGTGAGGGCTGATAACATTTCTTACAGCTTAAGTTCTTAAAACTCCCAGTAGCTGTTGTTAATTTTAAATAATGTAGGTTTTATGTAATTATCATTCAAATGCACTTCTTCAGGTGTAAAAATGCTAATGGTGACTACCTGAATGATGGTAATGACAGAGGGATGTGAGGAAGGGGGCTGGAGGGAAGGTTGTTACACCTTTCATTAATTTCTATTATGACAGGTTTCCATTGCCATATTACAGCTGTTTTTTCAACTGACTTACATTTCTGCAATACAGCAAAGCTTCAGTGTGCTGCCATTGCAGGATTTACTGCTGGTTTTTTCTTCCTAGGTCATTTTAAATAGGTACTTTATGCTTGTCCTAAAGAAGAAAAGTAAATTCTAAAGATAACTTCTCAGCTCATCCCTTCTAAACAAAGGAAAAATATTATCTATGAACTTCTAGAATACTGTGGCATATATTCCCTTTTCAGAAATATGCTTTATAGGGGTTTGCCCCAAATGAATGTTCAGTACCTTCTTGGAAAGCTGAATTTCAGTTGTTTTCATAAGCACTTCACTGTACAAAAATCTTGCAAGAGAAATAATTAAGCCTGAAATTCTTTATAGGGTAATGGAGGATGGTAGTCAAACTGAGCTTTGAATATGCCTGTTTGTGTGACAG
Seq C2 exon
GAACTACTTCAGGAAGAAACCCGCCAGAAACTCAACCTGAGCAGCAGAATTAGGCAGCTAGAAGAGGAGAAGAACAACCTGCAAGAGCAGCAGGAAGAGGAGGAGGAGGCCAGGAAGAACCTGGAGAAACAGATGCTAGCCTTGCAGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.314 A=NA C2=0.804
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAATGTCTCAAGTCTCCTGGA
R:
CCTGCAAGGCTAGCATCTGTT
Band lengths:
246-1257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]