HsaINT0107479 @ hg38
Intron Retention
Gene
ENSG00000133026 | MYH10
Description
myosin heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:7568]
Coordinates
chr17:8493733-8495241:-
Coord C1 exon
chr17:8495137-8495241
Coord A exon
chr17:8493886-8495136
Coord C2 exon
chr17:8493733-8493885
Length
1251 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
CCTTTAAAAAAAAAACACAGGAG
3' ss Score
0.19
Exon sequences
Seq C1 exon
AATGAGCTAGATAATGTCTCCACCCTTCTGGAAGAAGCAGAGAAGAAGGGTATTAAATTTGCTAAGGATGCAGCTAGTCTTGAGTCTCAACTACAGGATACACAG
Seq A exon
GTATTCCCTGGGGAGCAAGGGGTCTTTATAATAACTAACATTTCTGTAATATATAAGCTGGTGAAATATGCTGGCCCCAGAATTGCCTTCTGTGTCACCTCTTACTAGTTTTATGTCATACTTTTATTTGGAGCCAGCCTTGCTACTCGGGATTTCTCCCTGGAAGCTCAGTGTCTTGATGTAGAGCCCCTGGGGTTCGTGTGTCTGGCAGGCACGTGGGTGGCCTCGGAGACAGCTCCAGCTGCCATTCACGGCCGCTGCCTGGGCTGTGGTTGACCCAAGCTATGGTCCTGCTGCACACAATGTCTTGCTGGCCATTTCCAATAAGATTGTTTCCTTATGGTTGGAATTTCATCGTGCTGACCTGTGAGAAACAGTCCATTTTGTAAAAGGGTGAGTTGAGGCTTATCAGACTGTTAAGACCTGTATTGCATCATCCGTTAGGGATGTTTTTAAGTCAGCTACAGGTTACTTGAAAATAATGTAGCACTTTATTCTTGGAGTTTTACAGCTTAGTTTTGTTAAATTTACAAACACTTATGAGTGTTTATTTGCCAGGCTTTAGGCTAGGTGCTGGGGATTAAAAAAAAAAATCTCAGACAGGCCAAAAGTGGAATAATTAGGCAGTTGGGGACAAGTTCATTTTTACCAAAGCACACCCCATGCATGACAAGGTGCGGCCTGGTGAGTGAGACTAGAGGAGGCCGAAGCCATGGCCCAGAAATTCTGCTCCACACAACCAATGCCTCTGAAGACTTTGCAGTCTGAAAGTAACAGGAAAAACATGTTTGTGCTTACATTTTAGAAGTCAATCTGGCAGGAAATACAAAGGACGATAACTGAGGGATGCCTAAGACGGGAGAGGTGATCCTAGTTCGAAGGGCTGAGGGCCTGAACTAAGACGGGGCAGGGGGTGGAGAGGAAGGGATTCCAGGCGTGACTGAGGAGAGGCGGGGTGTGGTGGGGGACGCAGGAGGGGAGGCCTCGGGGATGCCTGGAGGCTCCAGCCTGGGCCCCTGGGTGGATGGCGCCGCCATTCGTTTTTCAGAGATGAGTCTGAAGCAGTGTTGGTGTGAAGAGCTTTTACAAAGTTATCGTGTGTGTTTTTAAATCATCTGTGTTTGTTAATGTCACTGGGCGTTCTCATGCATTGAGGCTGTCTCTTTTGTACGACATGAATTCTTTAATACAGGTGTATTTGTTTTGGTGATAAATGTAATGGAAGTGTTGCCCTTTAAAAAAAAAACACAG
Seq C2 exon
GAGCTTCTTCAGGAGGAGACACGCCAGAAACTAAACCTGAGCAGTCGGATCCGGCAGCTGGAAGAGGAGAAGAACAGTCTTCAGGAGCAGCAGGAGGAGGAGGAGGAGGCCAGGAAGAACCTGGAGAAGCAAGTGCTGGCCCTGCAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026:ENST00000269243:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.628
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGCTAGATAATGTCTCCACCC
R:
GACTGCAGGGCCAGCACTT
Band lengths:
254-1505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development