RnoINT0096323 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55392030-55392904:+
Coord C1 exon
chr10:55392030-55392134
Coord A exon
chr10:55392135-55392751
Coord C2 exon
chr10:55392752-55392904
Length
617 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
GCTCCCTCTTAAACATACAGGAG
3' ss Score
5.83
Exon sequences
Seq C1 exon
AATGAGCTGGATAATGTCTCAACCCTGCTGGAAGAAGCCGAGAAGAAAGGAATGAAGTTCGCTAAGGACGCCGCAGGTCTCGAGTCTCAGCTACAGGACACACAG
Seq A exon
GTACTCGGGGAGCAGGGGATGGAGAGGGCGTGAATAAAGTAAAGCTCTAATGTATCACAATGCTACACGCGTGCCGAGAGCACGTGCTGCATGCATTTCTGTGATGGGGCAGTCATTGACAGACACTGTTTCTGCATTTGGAGTGAGGTGCTCAAAATATGGGGGTAGAGGTCTCGGTTAAACTGCAGGGTAATTAAGTTACAGGGACAAGTTAAGCAACCAGCGCAGCCCCTGAGCAGCCTGGTCAGGGAGGCTGCAGGAGGCAGGAGCCATGTGTCACCTTGAAGAGTGCTCACGGCTAAAAGCAGCAAGGACATGGTTGCATGGAGATTTGGGGGAAGTCAGTCAGCTTGCCTGCTGAGTGCTGGGATTGAGGCAGAGGAGTGCCAAGGAAGAGACTGCAGCAGGAGCCGCATGTGTGGAAGGCATATGTGTGGGCCTAGGCAAGAATGAGACTGTTTACCTGTCGCTGGCTATTTCTTGTCCACAGGAGCGCTTGCTTTTTTGTGGCCTAATTGTCCAGAGAGTTACTTTAGTTTGGGCCTTTTGTTCCTCTGGTGGGATCGAGCCCCAGTGTTCGCTGCAGGTAACCTAGGCGCTCCCTCTTAAACATACAG
Seq C2 exon
GAGCTCCTTCAGGAGGAGACGCGGCAGAAACTGAACCTGAGCAGTCGGATCCGGCAGCTGGAGGAGGAGAAGAACAGCCTTCAGGAGCAGCAGGAGGAGGAAGAGGAGGCCAGGAAGAACTTGGAAAAGCAGGTGTTGGCCCTGCAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=NA C2=0.647
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGCTGGATAATGTCTCAACCC
R:
GGACTGCAGGGCCAACAC
Band lengths:
254-871
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]