DreINT0099743 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7481910-7485658:+
Coord C1 exon
chr6:7481910-7482158
Coord A exon
chr6:7482159-7485445
Coord C2 exon
chr6:7485446-7485658
Length
3287 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGTGTAAATGTGTGTGACAGATG
3' ss Score
7.18
Exon sequences
Seq C1 exon
CTGGTGGAGACCAAGAAGAAGCTGGAGGATGATGTTGGAGCCCTTGAGGGTCTGGAGGAGGTCAAGAGGAAGCTACAGAAGGACATGGAGGTGACCAGTCAGAAGCTGGAGGAAAAGGCCATTGCTTTTGACAAGCTGGAGAAAACCAAGAATAGGCTGCAGCAGGAGCTGGATGACCTCATGGTGGACCTAGACCATCAGAGACAGATCGTCTCAAACCTAGAGAAGAAACAGAAGAAGTTTGACCAG
Seq A exon
GTAAGTGTCAGTTTTGGTTAAAGGAAAGCAATTTGAAATGAAAGTAACTTACCCATCCTTATACTGTTAAACCAATGGGATTTTCATCCCTGATTGCTCAAATAAAGATATTTTTGATAGTCCTTTCCACCACAACGTTGCTCACATATTTTTAAGGCTTAAAATTGTTTCATGGGTTTACAAAGTTGATTGTATATCATATATACGTCGAACAGAAATATATTAATAACAAGTAAAGAGTCTTTAATGTTTCAAATAACATAAAAATAAAGTATGAAAATAAAAGTTTGTATTATTCCATCATTATTCAGCATTGCAGATATGACTATAAAATTAAAGAATATACATACAGTTGAAGTCAGAATTATTAGCCCCCTTTTGATTTTATTTTTATTTTTTTATATTTCCCAAATGATGATTAACAGAGCAAGGAAATTTTCACAGTATGTCTGATAATATTTTTTCTTCTGGAAAAAGTCTTATTTGTTTTATTTCGGCTAGAATAAAAGCAGTTATTAATTTTTTAAAAAACATTTTTGGGACAAAATTATTAGCCCCTTTAGGATATTATTTTTTTCAATAATCTACAGAACAAACCATCGTTATACAATAACTTGCCTAATTACCCTAACCTGCCTAGTTTACCTTATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAAATATCAAGTAAAATACGTTTTACTGTCATCATGGCAAATATAGAATAAATCCGTTATTAGAAATAAGTTTTAAAACTATTATGCTTAGAAATGTGCTGAAACAATCTTCCCTCCATTAAACAGAAATTGGTGAAAAAAATAAACAGGGGTGCTAATAATTCAGGGGGGCTAATAATTCTGACTTCAACTGTATTACCCGTACTTAAAATATATAAAAGATTACATCATCATACTTAATTTTAATGAAAAACTTTTTTGCTGGCAAATGAGTAAAACCTAGTCGTTTTAAAGTTGGTGGCAAATTGCTAAGAATTTAAATTGCAAATAGTATATGAGGCAGCATTTTCATTCATAGGGCATTTGCAAAGAAAACTAATCTAATTAGTTTACAAATCAAGTAATGCGTAATAAAATTAAATGACACAGGAAATGTATTTAACACACAAAGAAAAGGGGAAGGTGTAGAAAGGCAGTGAAAGCCCAGACAGCAGTTAAAATCTTTTAGTAGATCTTCAGCACCCATCTGTAACTGAATATTAGCTGCTTCAGTCCAACATCTGCATTATCAGGATGATGAACCCCGGTGGACATTTCAGCAAGACAATGATCCAAACGCACAGCCAAGCTAACTCTCATATGCTTTCAGAAAAAGAAAATAGAGCTGTTGAGTGGCCCTGGCAATCACCTAACTTGAATCCGATAGAGATTACTAATCAAAGATCAGATTTGATAGACAGAACCATCATGACTTCATTCTCTTTATGAGAGGTATCTTAAAGCTCACCAAAAAAGCCTTTTATATAAAGTATTAAATACATCTCAGTAGTTCAGCACTTTCTCCTTGTGTCATGGTTACTCATTTTTCAGATTTTTTTTTGTTGTTTAATTTTTATGTTTGTATTGCATTTACATTTAGTCATTTAGCAGACGCTTTTATCCAAAGCGACTTACAAATGAGGACAAGGAAGCAATTTACACCGCTATAAGAGCAACAATGAATAAGCTGTAGGCAAGTTTCAGGTCTGTAAAGTCTAAAGCCTGATTTATACTTCTGCGTCAAACACCGGCGTATGCTACGGCGCTGACGCATAGCCCTTCGCCGTGGCCATCGCCGTCACTGACGTGCACCTCTCAAAAAATGTAACTACACGTCGCAACGACGCGTAGCATAAGCTCTGTGATTGGTCGGCTTGGTAGCGCTGACGAGTCTGGGCGGGACCGAGAGGCGCGCGAATGGCGCGACGCCGCGCGAGCGATTGTTTACAAGTGTGGAGTCCCGTGAAGGAGCTCCGGATGGAAAGTTTTGTTTTGTGTTTACCTCATAGTTAAAGTTGTTGCACGTCCGCCGGTTCCTGCCTCAAAATGAGCGAGTTTGAGCCACTTGTACATCCCGGAAGTGTTCAGGAAATGCAAAAAAGTAGCGAAGAAACTTGACACAGAGGAACATTTACACCTCACTGCCAACTAGCGTTTCGGAAGTGTTAATGCAGACCGGCAGAGACAGCGCGCAGAAGTATAAATGCACAGCCACGCGCGTTGCCTGCGCCGTGGGTTACGCCGGTCACCTGACGCAGAAGTATAAATCAGGCTTAAGAAGGAAAGCATTAGTAATATATATATATATATATATTTTTTTTTTAATTAGTGGTATATCCAGAGAGGCAATTGCAGATTAGGAAGTTAAGTGGAGAATAAATAGTGGAGTTTTTAGTCGTTTCTTGAAGACAGCGAGTGACTTTGCCATTCTGATGCAGTTAGGGAGTTCATTCCACCAACTGGGCAGATTGAATGTGAGAGTTCGGGAAAGTGATTTTCTTTCCTCTTTGGGATGGAACCACAAGGCGACGTTCAGAACGCAAGTTTCTGGAGGGCACATAAATATGCAGAAGTGAGAGCAGATAAGAAGGGGCGCAGCCAGAAATCGCTTTGTAAGCAAACATCAGAGCTTTGAATTTGATGCGAGCAACAACTGGCAGCCAGTGCAAACGGATGAGCAGCGGAGTGACATGTGCTCTTTTAGGTTCATTAAAGACCACTCGTGCTGCTGCGTTCTGAAACAGCTGAAGAGGCTTGATAGAGTTAGCTGGAAGCCCCGCTAGTAGAGAGTTGCAGTAATCCAGTCTGGTGAGAACAAGAGCTTGAACAAGGAGTTGAGCTGCATGTTCAGATAAGAAGGGTCGGATCTTTCTGATGTTATAGAGTGCGAATCTGCACGATCGAGCAGTTCTAAAAAATGTGGTCAATTGTTTGGGTTTTTACCAAAATCTGGTTCAATTTCATGTCAACAGCTCCTAACAAAAGCGTAATGTGTTCAATGCATATTTATGTTCTTTTAGTGAATGGACCGAAATCTCACGTTTCATTAAAGCAATCTGCTAAGGTGATCAACAAAAAAAATCATGTGTTTATAAGTAAATTAAGTGGCATGAGGGTGATCAACTAATGGCAGAACTTTATTTGTTGGTGGACTATCTCGTGTGAAGTTTTTATTTGTATATAGTTTAGATATACAGTTTATTTTTTCCATTGGAGCCTTTAAAACTGCTGACAATAATAAGTGCATGTGTAAATGTGTGTGACAG
Seq C2 exon
ATGCTGGCGGAGGAGAAGACCATCTCTGCGCGTTACGCTGAGGAGCGGGACCGTGCCGAGGCCGAGGCTCGAGAGAAGGACACCAAAGCTCTGTCTATGGCCCGAGCCCTGGATGAAGCTCTGGAGGCTAAAGAGGAATTCGAGAGACTCAACAAGCAGCTCAGAGCTGAGATGGAGGATCTGATCAGCTCCAAGGATGACGTAGGCAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.634
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PU(36.6=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]