MmuINT0103237 @ mm9
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68615610-68616554:+
Coord C1 exon
chr11:68615610-68615858
Coord A exon
chr11:68615859-68616341
Coord C2 exon
chr11:68616342-68616554
Length
483 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTGCTCTGCTCTCACACAGCTG
3' ss Score
8.78
Exon sequences
Seq C1 exon
CTGGCTGACACCAAGAAGAAAGTGGACGATGACCTGGGGACAATCGAGAGTTTGGAGGAAGCCAAAAAGAAACTGCTCAAGGATGTGGAGGCGCTGAGCCAGCGGCTGGAGGAGAAGGTCCTGGCGTATGACAAGCTGGAGAAGACCAAGAACCGGCTGCAACAAGAACTGGATGACCTGACGGTGGACCTGGACCACCAGCGCCAGATCGTCTCCAACTTGGAGAAGAAACAGAAGAAGTTCGACCAG
Seq A exon
GTGAGGGGTTGCCTGTCCCCGGCCCTTAGGTTCCCCATCCTGACAAGGCTCACTTGGGTTTTGGGTTTGGTTTAAGACAACCTTTTCTTATTTAAATGCAATACATATTTATACAGTGTTCAGAATGCATAAAAAGGAAGTGTGTGGGGGACGCCTGTGAGTCCTGCACAGAGTTCTTAGGACGAGCAGTCTCGGGCTTGACAATGTCTCGTTTGGGAACATGTGTGTCTGTATAATGACATGCTGTGGACAGGACCCAAGTGTCAACCTAAAATTCATTCATGTTTCACATAAGCCTGTACTTACAGCCTGTACAACGTTTTGTGTTTTGACTGTGACCTATCCTATGAGGGCAGATTGGAATTTTCCAGTTGTGGCACTGTTGGCTCTCAGAGAGCCTTGGGGACATATGGATGGATGGTCAGCCTGCTGTGTTCTTAGACTCAGTGAGTGGCATTTTCACTGTGCTCTGCTCTCACACAG
Seq C2 exon
CTGTTGGCAGAAGAAAAGGGCATCTCTGCTCGCTATGCAGAAGAGCGGGACCGGGCTGAAGCTGAGGCCAGAGAGAAAGAAACCAAAGCGCTCTCCCTGGCGCGGGCCCTTGAGGAGGCCTTGGAGGCGAAGGAGGAATTCGAGAGGCAGAACAAGCAGCTTCGAGCAGACATGGAAGACCTGATGAGCTCTAAAGACGATGTGGGGAAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900-Myh10:NM_175260:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.644
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(13.3=100),PF115593=ADIP=PU(37.2=59.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGAGTTTGGAGGAAGCCA
R:
TCTCGAATTCCTCCTTCGCCT
Band lengths:
351-834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: