HsaINT0107482 @ hg38
Intron Retention
Gene
ENSG00000133026 | MYH10
Description
myosin heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:7568]
Coordinates
chr17:8492297-8493024:-
Coord C1 exon
chr17:8492776-8493024
Coord A exon
chr17:8492510-8492775
Coord C2 exon
chr17:8492297-8492509
Length
266 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCCCATCCCCTTCTGCACAGCTG
3' ss Score
7.28
Exon sequences
Seq C1 exon
TTGGCTGATACCAAGAAGAAAGTAGATGACGACCTGGGAACAATTGAAAGTCTGGAAGAAGCCAAGAAGAAGCTTCTGAAGGACGCGGAGGCCCTGAGCCAGCGCCTGGAGGAGAAGGCACTGGCGTATGACAAACTGGAGAAGACCAAGAACCGCCTGCAGCAGGAGCTGGACGACCTCACGGTGGACCTGGACCACCAGCGCCAGGTCGCCTCCAACTTGGAGAAGAAGCAGAAGAAGTTTGACCAG
Seq A exon
GTGGGTCGGCCACGTGTCGTTTCCTCCTGGCAGAGCTCTTGCTTTTGTTCGTTTGGTTTAAAATAATCTTATTTAAAGGCATTTAAATGTGATACATGTTTATATCAAAATTGGAAAAAGGGAAAGCAAAAAAAAAAAAAAAAAGGAAATACAAGAACACCATAATCTAGTGGCAGCACTCTAGCGATAAATCAGCCACATGGTGGAAGAGAAAAGTTGATGTCACTGTTTCGGTTTTTCGTATTCCCCCATCCCCTTCTGCACAG
Seq C2 exon
CTGTTAGCAGAAGAGAAGAGCATCTCTGCTCGCTATGCCGAAGAGCGGGACCGGGCCGAAGCCGAGGCCAGAGAGAAAGAAACCAAAGCCCTGTCACTGGCCCGGGCCCTCGAGGAAGCCCTGGAGGCCAAGGAGGAGTTTGAGAGGCAGAACAAGCAGCTCCGAGCAGACATGGAAGACCTCATGAGCTCCAAAGATGATGTGGGAAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026:ENST00000269243:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=0.761
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(10.7=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(12.0=100),PF115593=ADIP=PU(37.3=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCACTGGCGTATGACAA
R:
GCTGCTTGTTCTGCCTCTCAA
Band lengths:
296-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development