DreINT0099818 @ danRer10
Intron Retention
Gene
ENSDARG00000100972 | myh11b
Description
myosin, heavy chain 11b, smooth muscle [Source:ZFIN;Acc:ZDB-GENE-101124-2]
Coordinates
chr3:36546094-36546622:-
Coord C1 exon
chr3:36546374-36546622
Coord A exon
chr3:36546301-36546373
Coord C2 exon
chr3:36546094-36546300
Length
73 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGCA
5' ss Score
-3.12
3' ss Seq
ATTACTTTTTTCTCTTCAAGATG
3' ss Score
8.57
Exon sequences
Seq C1 exon
TTGTCGGAGGCAAAAAAGAGATTGGACGAGTACTCCAGCAATTTCCAAATGCTTGAAGAAAGCAAAAAACGGCTACAGAGGGATCTGGAGGCCACTAAAGGAGAATTAGAAGAGAAAACTGCAAGCTATGACAAGTCAGAGAAGACCAAGAACCATCTTCAGCAAGAGCTGGATGACGTCCTGTTAGACCTAGACAACCAGAGACAGCTGGTTTCAAATATGGAGAAGAAACAAAGGAAATTTGACCAG
Seq A exon
GTTGCATTTCTGTTATAATTTGTCCTTTTCCTCAGTAAGATTACTGCTGCTCAATTACTTTTTTCTCTTCAAG
Seq C2 exon
ATGCTTGCGGATGAGAAGACCCTCTCCAGCAAATATTCTCAGGAGCGTGACTGCGCAGAGGCAGAGGCACGGGAGAAGGAGACCAAATGTTTGGCCCTCACTCGAGCGCTGGAGGAATGCCAGGGTTCATTACGTGAGTTAGAGAAACTCAACAAGACACTTCGCACTGACATGGAAGATCTAATCAGTTCAAAAGACAACAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100972:ENSDART00000166896:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.819 A=NA C2=0.580
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTAGACAACCAGAGACAGCT
R:
CTCGAGTGAGGGCCAAACATT
Band lengths:
168-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]