GgaINT0015077 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7632973-7633701:-
Coord C1 exon
chr14:7633453-7633701
Coord A exon
chr14:7633186-7633452
Coord C2 exon
chr14:7632973-7633185
Length
267 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
TTAATACTACCTTTTTATAGATG
3' ss Score
7.85
Exon sequences
Seq C1 exon
CTCTCCGACTCTAAGAAGAAGCTACAAGAATTTACTGCTACAGTAGAAACTATGGAAGAAGGTAAAAAGAAACTGCAGAGGGAAATTGAAAGTCTCACACAACAGTTTGAGGAAAAAGCTGCTTCTTATGACAAACTGGAAAAAACCAAGAACAGACTCCAGCAGGAACTGGATGACCTAGTGGTGGACTTAGATAACCAGCGTCAGCTGGTCTCCAACCTGGAGAAGAAGCAGAAGAAGTTTGATCAG
Seq A exon
GTGTGGATTTAAGATTCTCCTTTGCTGTGTTATCACCTGACTTCTCTGTGACTCACAGGAATTCAAGTGAAAGATGATAGTGAAAGATAAAGCAGGGTCAAAAAAATAAGCTAAACTTGAATGAAACATACCATATAGCAGTTAATTTCTACTGATATGCATTAATCAAAATGCAGATTTCACTCTGTCATCATAACTGACAAGAAAGTTGTAACAGAAAAAAAAACCTTATACTAATATTCCTATATTAATACTACCTTTTTATAG
Seq C2 exon
ATGCTGGCTGAAGAGAAAAACATCTCTTCAAAATATGCAGATGAAAGGGACAGAGCAGAAGCTGAAGCTAGAGAAAAGGAAACAAAGGCTCTATCCTTGGCCCGTGCACTTGAAGAGGCATTGGAAGCCAAAGAAGAACTGGAGAGAACAAACAAAATGTTGAAAGCTGAAATGGAAGATCTTGTTAGCTCCAAAGATGATGTTGGCAAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.446 A=NA C2=0.887
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.6=100),PF045827=Reo_sigmaC=FE(58.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF045827=Reo_sigmaC=PD(7.1=14.1),PF115593=ADIP=PU(36.6=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGACTCCAGCAGGAACT
R:
TGCCAACATCATCTTTGGAGCT
Band lengths:
308-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]