RnoINT0096366 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:845428-848623:+
Coord C1 exon
chr10:845428-845676
Coord A exon
chr10:845677-848410
Coord C2 exon
chr10:848411-848623
Length
2734 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TGAATCCTATGTTCTTTCAGTTG
3' ss Score
9.08
Exon sequences
Seq C1 exon
CTCTCAGACTCTAAGAAGAAGCTGCAGGACCTTGCAAGCACTATTGAGGTCATGGAGGAGGGGAAGAAGAGGTTGCAGAAAGAGATGGAGGGTCTCGGCCAGCAGTATGAGGAGAAGGCCGCTGCCTATGACAAACTGGAGAAAACTAAGAACAGGCTTCAGCAGGAGCTAGATGACTTGGTCGTGGACTTGGACAACCAGCGGCAACTGGTATCCAATCTGGAAAAGAAGCAGAAGAAATTCGATCAG
Seq A exon
GTAGGGCTGAAAGTCCTTCACATGGGGTGAAGTCAGTTCTGTGCTGTACTGGAGAGTTGCTGGGAATCTGAGTCTCATCTGGACTTTGCTGGACACTGTGGAGGGCTATCTTGTCTCATCTTAGGTGACTGTAACATATGAGGACTGCTGGGTCAGGAGATGAACACATCAGAAGGCTTAACATTGAGACTTTTCTAGGTATAAGCACTGTGAAACTTGCTGACAAGCATGGCCTCAGGGCTGCCACCAGTTCTAATCAAGTGAGGGTCATTTATCCCTCCACTCATTGGACACTCAGGAGTACTGCTGGAAGTTATAAGTAACCCTAAATGTCATTTTTTGGAGCACATTATTTAATTTCTTCTCTTTAAAAAAATATGGTCTCCTGATGACCAGCTTGGCCTTGAACTCATTATGTAGCTATAGTTGGCTTTGAACTTCTGAACTTGTAATCCTCCTGCCTTCACCTTTGTAATGCTGGGATCACTGGTGTGCCAGTGAGTGTAGGGATAAATGACCCTCACTTTATTGAAAATGACATTAGAATTATTTTTAACACTCAGCAGCGCTCCTGAGTGTCCAATGAGTGGAGGGATAAATGACCCTCACTGGTGGAGGCTGGTGCCAGCCCTGAGGCCATGCTTGTCAGCAAGTTTCACAGTGCTTATACCTATGAAAGTCTCAATGTTAAGCCTTTAGTCTAATAGTAAGACATTGTTGGTTTTGAGTAATAATGGAGAGAGAGCCAGGGTAGGTAAACACTCTACCAACTGAGGCCTAGGCCCTTCCCTCAAAATATATCCTTGGTAATACCCAATGCAGTCACTACCAGATTCAATCATTAACATCGTGCTACATGCCTTTTGCCTTACTTTTGGAGAAGGCAGTGGGCAGAGGGTATTACTATGCAATTCTATCTGGTCTAGAACCCATAGTGTAGGCCAGGCTGGCCTCAAACTTACAGAGATCTGCCTGCCTCCAGCTCCTGAGTGCTGAGATTAAAGGTGTATGTCACCATGACTAGCCCTATCCTAGTTATTTATAATAAAGATGAATCACAGTAACCCAACATATTTCATTTTTTTGGGGTGCATTTCAAAGCAAATTAAAAACATCTATTCCCTTCTCCTTTAACATTTAACATTGCATGTTAAAAAATACCCGGGCTGGTGAGATAGCTTACTTGTAACAGATCTTGCTGCCAAGATTCATGACTTAATTCCAGTTCCTAAAACCTTTGGTGGAAGTAGAGACCAGACTTACACAATTTGTCCTCTAGTCATCATGTAGCACACACACACACACACACACACACACACACACACACACACACACACACAAGTACACACACACACACACACAAGTACACACACACACAAGTACACACACACACACACAAGTACACACACACACACACACAAGTACACACACACACACATACACACACAAGTACACACACACACACACATACACACACACAAGTACACACACACATACACACACACAAGTACACACACACACACACAAGTACACACACACACACAAGTACACACACACACAAGTACACACACACACACACAAGTACACACACACACACAAGTACACACACACACAAGTACACACACACACACAAGTACACACACACACACACAAGTACACACACACACAAGTACACACACACACACACAAGTACACACACACACACACACACATACACACACACACACACATACACACAAATAAAAAATACTTTTACTTAAAAAATAGTTTTGCAGGCAGGAATAGTAGCACAGGCCTGAAATTCTGAGTCTCAGAAAGATGAAGCAACAGAATTATGATGAATTTAAAGCTAGACTGCATAGTAAGACTTTGTCTTAAAACACTAATATTAAGTAATATTGTTTTCTATCTTTGAGGTAAATTTATATGTGCTGTGATGAACACATCTTTTCAAATGTGCACTCATACTGTTCTGATAAGCATACCTGTTATGACCGAAATTCCTAAACACTCCCTCTAATAATATAGACTAACCATACTTATTAAACATGATTTTATTTACACACGACATAGGGTTATTCCAAAACTCAATTTATAGATTGTGTTGAGAACTCAAATACTAGAGATTCAGGGGCTACCACCCACCTTGACAGGCCTCACCATCTTGAGCTTCTGGGACACCTCAGTGCCTCTGTTTTTCAGCAATCTCTCCACTTTGGACTGCCATTTGCCCCCACGGTCTCACTTTCCACTAGAAGGCCAGAAGTGATTTCCACTACCTTCCTGTTGATCTTCTGTGGGGTTTGGTATCACCTGTGCTGTTAGGAGATCTGCTGAATTTTGCAAGTCTAGGTTTAGGTACCATAGTTTGTAACATACTGCCCTCTTCTCCGTCAGATGAAAGTTGTGTTAACATGGAGCATAAAAGTCATCTTTGACTTCTATCCAAGTAAGGTGCAAAACCATACACCCTTCATGTGGTGCGTGGGTGACTTTGTAAAAAAAATATAGTGTGGCCATGCCTCCGTAATCATTCAATGCCACATTGTCCTCAGGAGCAGGATGTGCTATCCCAATGGGCAGCGAGAAAGTAAAGAACCCAACTGACTTGTACATGTATCTAAATGACTGGCACTTCCACTAGGCACACTCAGTATGATCGGGTCTTTTCTACATTTGGAGTTTGGTGAGCCCCAGGTGGTTGGGGATGCCTCTGAATCCTATGTTCTTTCAG
Seq C2 exon
TTGTTAGCTGAGGAAAAGAACATCTCCTCCAAGTATGCGGATGAGAGAGACCGAGCTGAAGCAGAGGCCAGGGAAAAGGAAACGAAGGCTTTGTCTCTGGCCCGGGCCCTGGAGGAAGCCCTGGAAGCCAAAGAGGAACTGGAAAGGACCAACAAGATGCTCAAGGCCGAGATGGAAGACCTGGTCAGCTCCAAGGATGACGTGGGCAAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.494 A=NA C2=0.831
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.6=100),PF045827=Reo_sigmaC=FE(58.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF045827=Reo_sigmaC=PD(7.1=14.1),PF115593=ADIP=PU(36.9=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]