DreINT0099821 @ danRer10
Intron Retention
Gene
ENSDARG00000100972 | myh11b
Description
myosin, heavy chain 11b, smooth muscle [Source:ZFIN;Acc:ZDB-GENE-101124-2]
Coordinates
chr3:36545484-36545980:-
Coord C1 exon
chr3:36545768-36545980
Coord A exon
chr3:36545646-36545767
Coord C2 exon
chr3:36545484-36545645
Length
122 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTAG
5' ss Score
3.1
3' ss Seq
TTTACTCACTTCATGCACAGGTC
3' ss Score
8.37
Exon sequences
Seq C1 exon
GCCCATGAGCTGGAGAAGACCAAACGTGCACTGGAGGCTCAAGTGGAAGAAATGACAATTCAGATGGAGGAGCTTGAAGATGAATTACAGGCTGCGGAGGATGCTAAGCTCCATTTGGAAGTAAATATGCAGGCCCTCAAAGTCCAAATACAAAGAGACATCCAAGGCAGAGAGGAGCAAAGTGAAGAGAAGAGGAAACAACTCCTCAAGCAG
Seq A exon
GTGTAGATCAATTTCTTTCTGGGTCTTCTTGAATTTGAACTGCACTTGTAGATTATTTAACTTTATTCATAAAGCAATAGCAAGAAATCTTTTCTTTTATTATTTACTCACTTCATGCACAG
Seq C2 exon
GTCCGTGAGCTTGAGGCTGAGCTAGAAGATGAGCAGAAGATGAGAACGTCCTTGGCTGCTGCCAAAAAGAAACTGGAAGGGGATTTGCAGGACCTTGAAGACCAGGTTGATGTAAACAGCAGAGCGAGGGATGAGGCCGTTAAACAACTCCGAAAGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100972:ENSDART00000166896:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.831 A=NA C2=0.981
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACCAAACGTGCACTGGA
R:
GCAGCCAAGGACGTTCTCATC
Band lengths:
258-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]