GgaINT1018544 @ galGal4
Intron Retention
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7565712-7566684:-
Coord C1 exon
chr14:7566472-7566684
Coord A exon
chr14:7565874-7566471
Coord C2 exon
chr14:7565712-7565873
Length
598 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
ATGTCTTCTCTAATGATCAGCTC
3' ss Score
4.77
Exon sequences
Seq C1 exon
GTCCATGAATTGGAGAAATCTAAACGGACACTTGAGCAGCAAGTAGAAGAGATGAAGACACAATTAGAAGAGTTAGAGGACGAATTACAGGCTGCTGAAGATGCCAAACTCAGGTTGGAGGTTAATATGCAAGCCATGAAAAGCCAGTTTGAAAGAGATTTACAAGCCAGAGATGAACAGAATGAGGAGAAGAGGAGACAACTCCTTAAACAG
Seq A exon
GTATCATTTTACTATTACAAACACAGTAACAAAACCAAAAAACCTGAATGTCCCCAGTCTCATGCTATTACTAACGCACTTCACTATCAGAAGAAAACATATATATAAAGATAGCCTAACAGTGTTACATTTAACATTTCAGTAGCAGGTGCACAATTGCTAACAGATGTAGCAAGTCAACGCTACAGTCAATGTAGTATAAAACACATGAATTACTTTCCCTAGCACAGTACATACTACTTTCCCTGTGTTCCCAGAGCAAGTGAAATAAGACAACTTCTGATATATCTGCCTTCCCAAAGTACGTGAAACAGATACCAAAGCATTGGAAAGGGAAACAGACAGGACAGAGCCTATTTGCACAGCAGCTTTGTTACAGCAAGATGAAATCCCATGGTTATCTTATTTCCACAAGTACAGGCCCACACTGCTGACTCCTTTGGAGAATCTTCAATTTTTGAACAAAACAGAAATGCATTTTAACTGCTAGTAATACCACAATTAATAGATACACAGACTGTGTAGATTATCCAGACTTACACAGAGTGTTTAAGAACATTCAAGGATGCTTTCTAAACATGTCTTCTCTAATGATCAG
Seq C2 exon
CTCCATGAACATGAAACGGAACTGGAAGATGAGCGGAAGCAACGTGCCCTGGCAGCTGCAGCCAAAAAGAAGTTGGAGGTTGATGTCAAAGATCTAGAAAGCCAAGTCGATTCTGCTAACAAAGCTCGGGAAGAAGCCATCAAACAACTTCGCAAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000010534:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=NA C2=0.796
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PD(61.1=97.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGGACACTTGAGCAGCAA
R:
TGCGAAGTTGTTTGATGGCTT
Band lengths:
346-944
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]