RnoINT0096368 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:848833-849427:+
Coord C1 exon
chr10:848833-849045
Coord A exon
chr10:849046-849265
Coord C2 exon
chr10:849266-849427
Length
220 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACCCCGTCTTCCTGGCTCAGCTG
3' ss Score
6.79
Exon sequences
Seq C1 exon
GTGCACGAGCTGGAGAAGTCCAAACGAGCCCTGGAGACCCAGATGGAAGAGATGAGAACTCAGCTAGAGGAGCTGGAGGACGAGCTGCAGGCCACTGAAGACGCCAAGCTGCGGCTGGAGGTCAACATGCAGGCCCTCAAGGGCCAGTTTGAACGAGATCTCCAGGCTCGGGATGAGCAGAATGAGGAGAAGAGGAGGCAGCTACAGCGGCAG
Seq A exon
GTGAGCCAGCTCCCGTCTGTGACTGGGGACATCCCCTCTTCCACTCCCACTTGCTGCCAAAATTCAGCCCCTAAAACCTACTTACTGGAGGCAGTGGACACCCCTTCCCCCAGCAACACACATTGTGTTATGCTGAGTCTCTGGGAACTCAGGGAGTAGCCAAGTGAACTGGGGTTCTGAGAGCCACCCTTATAGCTTGTACCCCGTCTTCCTGGCTCAG
Seq C2 exon
CTGCATGAGTATGAGACAGAACTGGAAGATGAACGGAAGCAAAGGGCTCTGGCGGCAGCAGCCAAGAAGAAGCTGGAAGGGGATCTGAAAGACCTGGAACTCCAGGCTGACTCAGCCGTCAAAGGGAGGGAGGAAGCCATCAAGCAGCTTCGAAAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.859 A=NA C2=0.556
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PD(61.3=95.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGAGGAGCTGGAGGACGAG
R:
AAGCTGCTTGATGGCTTCCTC
Band lengths:
300-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]