HsaINT0107524 @ hg38
Intron Retention
Gene
ENSG00000133392 | MYH11
Description
myosin heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:7569]
Coordinates
chr16:15720151-15721051:-
Coord C1 exon
chr16:15720839-15721051
Coord A exon
chr16:15720313-15720838
Coord C2 exon
chr16:15720151-15720312
Length
526 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CATCTCTATTCCTCGCCCAGCTT
3' ss Score
4.7
Exon sequences
Seq C1 exon
GTCCATGAGCTGGAGAAGTCCAAGCGGGCCCTGGAGACCCAGATGGAGGAGATGAAGACGCAGCTGGAAGAGCTGGAGGACGAGCTGCAAGCCACGGAGGACGCCAAACTGCGGCTGGAAGTCAACATGCAGGCGCTCAAGGGCCAGTTCGAAAGGGATCTCCAAGCCCGGGACGAGCAGAATGAGGAGAAGAGGAGGCAACTGCAGAGACAG
Seq A exon
GTGCGTGCTGCCGGGGAGGCCAGCAGAGGGAGGTCGGGTGGCCTTTTTCATTCCTATCACCACTCTCATGGTTGGTGTGGAAACTTCGTTTTCTTTATTTTTTTTTGAAACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTAATCTCAGCTCACTGCAACCTCCACCTCCTGCCTCAGCCTCCCGAGTAGCTTGGATTACAGGCGCATGCCACCATACCTAGCTAATTTTTTTTTTTTTTTCAGTGGAGACAAGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCCATTCTCCTGTTGGCCTCCCAAAGTGCTGGGATTACAGACATGAGCCACCCACGCCCGGCGTGATTCCGTTTTCTCATCTGCAACTGGGGATGAGATGCCCACCTCACAAGGGGGCTGTGCTGGGGAAGGGGTGCAGTGATGTGCTGCCTAGGTGAGCCAAAGGACCTCCCAGGGGCAAGTGGGGCAGCACACATCTCTATTCCTCGCCCAG
Seq C2 exon
CTTCACGAGTATGAGACGGAACTGGAAGACGAGCGAAAGCAACGTGCCCTGGCAGCTGCAGCAAAGAAGAAGCTGGAAGGGGACCTGAAAGACCTGGAGCTTCAGGCCGACTCTGCCATCAAGGGGAGGGAGGAAGCCATCAAGCAGCTACGCAAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133392:ENST00000300036:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.859 A=NA C2=0.481
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PD(61.6=97.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGTCCAAGCGGGCC
R:
GTAGCTGCTTGATGGCTTCCT
Band lengths:
352-878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development