HsaEX0042204 @ hg38
Exon Skipping
Gene
ENSG00000072864 | NDE1
Description
nudE neurodevelopment protein 1 [Source:HGNC Symbol;Acc:HGNC:17619]
Coordinates
chr16:15694165-15726353:+
Coord C1 exon
chr16:15694165-15694256
Coord A exon
chr16:15696709-15696860
Coord C2 exon
chr16:15724191-15726353
Length
152 bp
Sequences
Splice sites
3' ss Seq
AAAAGTGTATTTCTGTCCAGGCA
3' ss Score
4.78
5' ss Seq
GGGGTCAGT
5' ss Score
3.99
Exon sequences
Seq C1 exon
GCCTGGACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCGGATATCAGCCCTCAACATTGTGGGAGACCTACTGCGGAAAGTCGGG
Seq A exon
GCACTGGAGTCCAAACTCGCTTCCTGCCGGAACCTCGTGTACGATCAGTCCCCAAACCGAACAGGTGGCCCAGCCTCTGGGCGGAGCAGCAAGAACAGAGATGGCGGGGAGAGACGGCCAAGCAGCACCAGCGTGCCTTTGGGTGATAAGGG
Seq C2 exon
GTTGGACACGAGTTGCCGCTGGTTGTCCAAATCAACAACCAGGTCGTCCAGCTCCTGCTGAAGCCTGTTCTTGGTCTTTTCCAGTTTATCATAAGCGGCCGCCTTCTCCTCGTACTGCTGGGTGAGGTTCTCGATCTCCTTCTGGAACCTCTTCTTCCCCTCTTCCAGAGCTTCCACGGTGCTGGCAAAGTCCTGCAGCTTCTTCTTCGAGTCGGAGAGCTACAAGGACAGCGTCCAGGGTAGGGTGAGAGGGGGACCATGAGTGGCCCCTGTCCCTGGCCCCACAGACTCTGAGAAGCGAAGACCATGTCTCCTCGTTGGAGAAACCCAATAGCAGGGGAAGCTGGGGGGTCAAGCACCATCGCACCAACACTCCACCGCGATCTGCCTGCGGGGGATCTCAGCGCAGAGAAGTTGAGAGGACCCATGAAGGAAGCAAGGACACGGGGCAGGCACCTGGATGTTGAGAGTGGAGATGTGGCGCTCCAGGTTCTGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000072864-'42-67,'42-57,46-67
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=0.810 C2=0.229
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(15.0=100)
A:
PF048808=NUDE_C=FE(25.0=100)
C2:
PF048808=NUDE_C=PD(8.5=81.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCTACTGCGGAAAGTCG
R:
CCTTGTAGCTCTCCGACTCGA
Band lengths:
250-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development