GgaEX1039139 @ galGal3
Exon Skipping
Gene
ENSGALG00000006500 | NDE1_CHICK
Description
NA
Coordinates
chr14:7618007-7620885:+
Coord C1 exon
chr14:7618007-7618098
Coord A exon
chr14:7618978-7619114
Coord C2 exon
chr14:7620210-7620885
Length
137 bp
Sequences
Splice sites
3' ss Seq
GTTACCTGTCTTTACCTCAGGCT
3' ss Score
7.56
5' ss Seq
AGGGTTAGT
5' ss Score
5.02
Exon sequences
Seq C1 exon
GTTTTGAGGACAGTTACTGTGCAACCCCTCTCACACCTGCTGCCAGAATATCTGCACTTAACATCATGGGAGACTTGCTGCGAAAAGTAGGG
Seq A exon
GCTTTGGAGTCCAAACTTGCCTCCTGCCGAAACTTTGTGTATGACCAGTCTCCAGACAGAACCACAGTGTCCATGTACATGAATAGAGATGCCCTTGAAACACGCATGAGTCCTCACCAGCCTCTCTGTGATACAGG
Seq C2 exon
GTTAGTGAAACGCCTGGAGTTTGGAACAAGACCTTCAAGTACTCCAGGACCAATGAGCCATCCTTCACAAAGTGTTGTTAAGATGCTGCTATGAAAAGGAAAAATAAAATCTTATGTACATATAACTTGAATATCAATAGGCAACCAGACAGAAGTGTAAGAGTAGTTGAGGCCTGAAAAAGGAACTACTGTTGATAATGGCATCTTATGGCTTTGCCCTTCTGGCTTCTATGCTGAGTTGTGTGCGTGGTGTGATGAAGCAATGTTGCCTAGCAGCACAGGACATAAAATTGCTTCCTGTATTCACTGCTGTGAATAACTCCTGCTTTGACACTGCCAGTTAAAGCTATCGTCGCTTTACCTACAGCAGGTTCCCAGTGCAACTCTTTAGGTTTTGGCTTTTGGTGTTAATAAAATTGCCCATGATTTCTGGCTTTCTGGTGCAGTCACTGAAGTTAGAGAAGTGGTTGTAGGTAGAAACAGGTGTATTTCTGTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006500-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.391 C2=0.677
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(15.2=100)
A:
PF048808=NUDE_C=FE(22.7=100)
C2:
PF048808=NUDE_C=PD(10.1=62.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTACTGTGCAACCCCTC
R:
TACACTTCTGTCTGGTTGCCT
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]