BtaEX0024063 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015986 | NDE1
Description
Bos taurus nudE nuclear distribution gene E homolog 1 (A. nidulans) (NDE1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100321]
Coordinates
chr25:14212562-14237237:+
Coord C1 exon
chr25:14212562-14212653
Coord A exon
chr25:14214134-14214285
Coord C2 exon
chr25:14234249-14237237
Length
152 bp
Sequences
Splice sites
3' ss Seq
GAAAGCATCTCTCTCTCCAGGCC
3' ss Score
7.37
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
GCCTGGACGACTCCACTGGGGGGACCCCCCTCACACCCGCAGCCCGGATATCAGCCCTCAACATCGTGGGAGACCTGCTGCGGAAAGTGGGG
Seq A exon
GCCCTGGAGTCCAAACTTGCTTCCTGCCGGAACTTCGTGTACGATCAGTCCCCAGGCCGAGCCAGTGGCCCAGCCTCAGGGCGGGGGAGCAAAAACAGAGACAGCGTGGACAGGCGGCCCGGCGGCAGCAACGTGCCTCTCGGTGACAAAGG
Seq C2 exon
GTTGGACACCAGTTGTCGCTGGTTGTCCAAATCGACGACCAGGTCGTCCAGCTCCTGCTGAAGCCTGTTCTTGGTCTTTTCCAGTTTGTCATAAGCAGCTGCCTTCTCCTCGTACTGCTGGGTCAGGCTTTCGATTTCCTTCTGGAACTTCTTCTTACCCTCTTCCAGCAATTCCACGGTGCTGGCAAAGTCCTGCAGCTTCTTCTTCGAGTCGGAGAGCTGAAAAGGCAGTGTCCAGGGTGGGATGAGAGGAGGCGGGGATAAGGGAGTCCCAGCCCTGTGCCCCTGAGAAGCCACGACCATCATTGAATAAAATCAACAGCAGGGGGAGCTGGTGAGCCAAGCAAAATGGCACCATGGAAGAAACTCAACAGCACGGGGAGCCAGTGAGTCAAGCAAAATGGTGCCACCGTTCTATCACAATCACATCCGAGCCACTGATCTACCCTCCAGGGCAAAGACACGCAGTGGGCACCTGGATGTTCAGGGTTGAGATGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015986_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=0.765 C2=NA
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(15.1=100)
A:
PF048808=NUDE_C=FE(25.1=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGATATCAGCCCTCAACA
R:
AAGAAGCTGCAGGACTTTGCC
Band lengths:
254-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development