MmuEX6060952 @ mm10
Exon Skipping
Gene
ENSMUSG00000022678 | Nde1
Description
nudE neurodevelopment protein 1 [Source:MGI Symbol;Acc:MGI:1914453]
Coordinates
chr16:14188313-14192928:+
Coord C1 exon
chr16:14188313-14188404
Coord A exon
chr16:14190087-14190232
Coord C2 exon
chr16:14191718-14192928
Length
146 bp
Sequences
Splice sites
3' ss Seq
GTAAGTCAATTTCTTTTCAGGCC
3' ss Score
5.9
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
GTCTGGACAGCTCCACTAGTGGGACGCCACTCACACCTGCAGCCCGGATATCAGCCCTAAACATCGTTGGGGACCTGCTTCGGAAAGTTGGG
Seq A exon
GCCCTGGAGTCCAAGCTAGCATCATGCAGGAACTTCATGTATGATCAGTCCCCAAGCCGGACAAGTGGGCCAGCCTCAGGACGAGGAACCAAAAACAGAGATGGTGTTGACAGAAGGCCAGGCAGTACCAGTGTGGGCGATAAAGG
Seq C2 exon
GTCAGGAAAACGCTTGGAGTTTGGGAAGCCAGCCTCAGAGCCAGCATCACCAGCGCTACCATCCGCCCAGGGTGTGGTCAAGCTTTTGCTTTAGGACCAATGAGAACTGCGCCCTCCCCTGTCTTCCTTACTTTATAGTCGGCTTTTAGTCGCTTTATTTTCAAGGTAGTTTGAGAAATAAGAGCCAGTATCACCAGCGTTCACTTTGTGCCGTGTAGCCTAAACTGACTACGGCTGGTGGTGGTGGCCTTGGCATCATCCCTGTGATGTGGCTCAGTCCCTAGCAGTGTGTGTCATGGAAATGAGCTCACACACACACAGACACCCCGCACAAGGCAGCTCTAACGTATGATGCCACTGGCTTCCTAGAGTTTTAATGGCCTCCAGAGGTGTTTTGCTCAGGAGCTCTCTGCAGCCTGCTTCCAGCTGAAGCTGTCTTCTGGAACATTCTCCTGGTGCTTTTACAGCATGATCAAATTGTATCTAGGACTGGGAGATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022678-'27-22,'27-19,29-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.555 A=0.813 C2=0.710
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(15.2=100)
A:
PF048808=NUDE_C=FE(24.4=100)
C2:
PF048808=NUDE_C=PD(8.1=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCGGATATCAGCCCTAAA
R:
GAACGCTGGTGATACTGGCTC
Band lengths:
254-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types