RnoEX0058755 @ rn6
Exon Skipping
Gene
ENSRNOG00000058007 | Nde1
Description
nudE neurodevelopment protein 1 [Source:RGD Symbol;Acc:620038]
Coordinates
chr10:860521-864903:-
Coord C1 exon
chr10:864812-864903
Coord A exon
chr10:863185-863330
Coord C2 exon
chr10:860521-861732
Length
146 bp
Sequences
Splice sites
3' ss Seq
GAAAGTCAATTTCTTCTCAGGCC
3' ss Score
4.17
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
GCCTGGGCAGTCCCAGTAGTGGAACCCCACTCACACCTGCAGCCCGGATATCAGCCTTAAACATCGTTGGGGACCTGCTTCGGAAAGTTGGG
Seq A exon
GCCCTGGAGTCCAAACTAGCATCATGCAAGAACTTCATGTATGATCAGTCCCCAAGCCGGAAAAGCGGGCCAGCCTTGGGCCGAGGAACCAAAAACAGAGACGGTATTGACAGAAGGCCAGGCAGCACCGCTGTGGGCGATAAAGG
Seq C2 exon
GTCAGGAAAACGCTTGGAGTTTGCGAAGCCGTCCTCACAGCTCTCATCACCAGCGCTGCCATCCACCCAGGGTGTGGTCAAGCTTTTGCTTTAGGACCAGTGGGAACTGCGCCCTCACCTATCTTCCCTACTTTATAGTCAGCTTTTAGTTATTTTTTTTTTCAAGGTAATTTGAGAAATAAGAGACCACATCACCAGCATTTACTTTGTGCTATGCAGCCTAAGCTAAGGCTGTGTGTGGCCCAGTCCCTAGCAGTGGATGTCACTAAAATGAGCTCCCCAACCCCAACCAGGCAGCTCTAAGGTATGATTTCATTGACTACCTAGAGTTTTAATAGCCTCCAGAGGTGCTTTGAATATGCGTAATCTTCAGAGCAGGACTAAAGCCCAGCTCAGGAGCTCTCTGCAGCCTACTTCCAGCTGAAGCTATATTCTGGAACATTTCCTGGTGCTTTTAAAGCATGATTAAATTTTATCTAGGACTGGGAGACTACAGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058007-'10-10,'10-8,11-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=0.796 C2=0.645
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(14.9=100)
A:
PF048808=NUDE_C=FE(23.8=100)
C2:
PF048808=NUDE_C=PD(10.4=65.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCCGGATATCAGCCTTA
R:
ATGCTGGTGATGTGGTCTCTT
Band lengths:
255-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]