DreEX6017860 @ danRer10
Exon Skipping
Gene
ENSDARG00000103902 | nde1
Description
nudE neurodevelopment protein 1 [Source:ZFIN;Acc:ZDB-GENE-050913-61]
Coordinates
chr3:36540490-36542530:+
Coord C1 exon
chr3:36540490-36540575
Coord A exon
chr3:36540670-36540815
Coord C2 exon
chr3:36540918-36542530
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGTCACTTTGTTTGTTTCAGAAT
3' ss Score
10.94
5' ss Seq
GGGGTTAGT
5' ss Score
2.75
Exon sequences
Seq C1 exon
TTGAAGGTCTGACTGGAACTCCTCTCACTACATCTGCACGAATATCTGCCCTCAATATAGTTGGAGAGTTGTTAAGAAAAGTCGGG
Seq A exon
AATCTTGAATCAAAGCTGGCATCATGCAGAGAGCTACACATCCCTGAGAAAACATCAAACCGAGCACTGATAGGCCAGAGTTCACCAAGCATTGCACGAGAAACACCAGAAATCCCATCCAACACAAATGGCTTGTATGATAAGGG
Seq C2 exon
TATGGTGAAACGACTGGACTTTGGAACAGGATCCAAGATAATGCTGTGACCAGCGCATCTTCTACAAACGCACAAGCATTCACACATCATCAGGAAAACAGTATTCCTAATCCAGTTATTATAAACAATGCTTTATTTTCAGAAGCTGAAGCAAGTGTTATGACCCAAGTCTTCCACGATCTAAGAAGGGTCTGCTTTTATGCTCATACAATATCAATCCTTCTGGTGTGCCTATATTAACTGTTCACCTGCTCTGTCTGGCCTGTGGACTTAAACTATAACTTTTTGCAGATGTACTAACTCTTTGTTTGTTTGTTTGTTTGTTTTTTATTTACGTTTTCAGGTTCTGGCGATTTATAGCCATTTTGAAATGCATAATCTGCACTGTAATCTTAATTTTTTTGGGTCCATAAATTGGGAGAATGTTGTGGGTGACTGAAAGTAAGTCCATAGATTTGCCTCTGCAACCCCAGTTACCTGGCACTAAACTACTGATCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103902-'6-9,'6-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.673 C2=0.000
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(16.6=100)
A:
PF048808=NUDE_C=PD(17.8=61.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACGAATATCTGCCCTCA
R:
GCAGACCCTTCTTAGATCGTGG
Band lengths:
248-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]