MmuEX6060952 @ mm9
Exon Skipping
Gene
ENSMUSG00000022678 | Nde1
Description
nuclear distribution gene E homolog 1 (A nidulans) [Source:MGI Symbol;Acc:MGI:1914453]
Coordinates
chr16:14188406-14193021:+
Coord C1 exon
chr16:14188406-14188497
Coord A exon
chr16:14190180-14190325
Coord C2 exon
chr16:14191811-14193021
Length
146 bp
Sequences
Splice sites
3' ss Seq
GTAAGTCAATTTCTTTTCAGGCC
3' ss Score
5.9
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
GTCTGGACAGCTCCACTAGTGGGACGCCACTCACACCTGCAGCCCGGATATCAGCCCTAAACATCGTTGGGGACCTGCTTCGGAAAGTTGGG
Seq A exon
GCCCTGGAGTCCAAGCTAGCATCATGCAGGAACTTCATGTATGATCAGTCCCCAAGCCGGACAAGTGGGCCAGCCTCAGGACGAGGAACCAAAAACAGAGATGGTGTTGACAGAAGGCCAGGCAGTACCAGTGTGGGCGATAAAGG
Seq C2 exon
GTCAGGAAAACGCTTGGAGTTTGGGAAGCCAGCCTCAGAGCCAGCATCACCAGCGCTACCATCCGCCCAGGGTGTGGTCAAGCTTTTGCTTTAGGACCAATGAGAACTGCGCCCTCCCCTGTCTTCCTTACTTTATAGTCGGCTTTTAGTCGCTTTATTTTCAAGGTAGTTTGAGAAATAAGAGCCAGTATCACCAGCGTTCACTTTGTGCCGTGTAGCCTAAACTGACTACGGCTGGTGGTGGTGGCCTTGGCATCATCCCTGTGATGTGGCTCAGTCCCTAGCAGTGTGTGTCATGGAAATGAGCTCACACACACACAGACACCCCGCACAAGGCAGCTCTAACGTATGATGCCACTGGCTTCCTAGAGTTTTAATGGCCTCCAGAGGTGTTTTGCTCAGGAGCTCTCTGCAGCCTGCTTCCAGCTGAAGCTGTCTTCTGGAACATTCTCCTGGTGCTTTTACAGCATGATCAAATTGTATCTAGGACTGGGAGATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022678-'12-15,'12-12,13-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.555 A=0.813 C2=0.710
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(15.2=100)
A:
PF048808=NUDE_C=FE(24.4=100)
C2:
PF048808=NUDE_C=PD(8.1=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCGGATATCAGCCCTAAA
R:
GAACGCTGGTGATACTGGCTC
Band lengths:
254-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: