DreEX0049753 @ danRer10
Exon Skipping
Gene
ENSDARG00000010953 | ndel1a
Description
nudE neurodevelopment protein 1-like 1a [Source:ZFIN;Acc:ZDB-GENE-040115-2]
Coordinates
chr12:26387240-26396003:+
Coord C1 exon
chr12:26387240-26387331
Coord A exon
chr12:26388817-26388965
Coord C2 exon
chr12:26395029-26396003
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTGTTGCTTTTGTTTCCTAGGCT
3' ss Score
9.65
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
TTCTGGCCAACGGCTCCACTAACGCAGCCCTCACACCATCTGCTAGAATATCAGCGCTCAATATTGTGGGCGATTTACTGCGCAAAGTTGGG
Seq A exon
GCTTTGGAGTCTAAGCTCGCAGCTTGTCGAAATTTTGCAAAGGACCAGGCAGCCAGAAAGAACTATGTTACCAACGTCAACGGCAATCTGATTAATGGCGACATTTCAAATTACTCTCATTCGCTCCACACATCCTACTTCGACAAAGC
Seq C2 exon
CAGGACGGTGAACGGTTTGGACCCCGGTGACGCGACACACATCACAGCCCCACCGCGATCCAACTCTCCATCTGGCCTGGTCCTCAGCGTATAAAACACACTCAGACTCCATTTATATCCACTATACAGCAATATAATACACTACTGAAGCTGAGTCCACCCTACAGTGGGGTTTACAACAAGGTTGGTAATGGGAGCCCTTCTGTAGCAGCACCTCATAACTCGGTTATAGTCTCGGTTCGCAATATACTACATGAAGTACTTGTTAATAGTTGTTAAAGATGTACAGTATATACCCTGACCTAATATATTTATGGTTACCGTTCATTTAGCATTCATGTACATATTTACGTTGTTTTCTGTTTGTTATGGATGTGATGTCTTCTAACACAATCCAAAAAATGTATTTATTGCTATAGTGTTGGATCGCAACGTATGTGAAACCTGAAAACAAAGGGAATTTATAATATTAATGTATGTTGTGCGATAACTGCACCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010953-'10-14,'10-11,12-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.010 C2=0.562
Domain overlap (PFAM):
C1:
PF0076914=ERM=FE(14.4=100),PF048808=NUDE_C=FE(14.9=100)
A:
PF0076914=ERM=PD(12.9=54.0),PF048808=NUDE_C=FE(24.3=100)
C2:
PF048808=NUDE_C=PD(10.9=68.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTCAATATTGTGGGCGAT
R:
ACAGAAGGGCTCCCATTACCA
Band lengths:
245-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]