GgaEX7009428 @ galGal4
Exon Skipping
Gene
ENSGALG00000001163 | NDEL1
Description
Nuclear distribution protein nudE-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKH4]
Coordinates
chr18:1691142-1696168:+
Coord C1 exon
chr18:1691142-1691233
Coord A exon
chr18:1693160-1693311
Coord C2 exon
chr18:1696134-1696168
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTTTCCTTTCACAGGCC
3' ss Score
12.5
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CTATACCAAATGGATTTGGTACAAGCCCTCTTACTCCTTCAGCTAGAATATCTGCACTCAACATCGTGGGAGATCTCTTACGGAAAGTGGGG
Seq A exon
GCCTTAGAATCCAAATTAGCTGCTTGCAGAAATTTTGCAAAGGACCAGGCATCACGGAAATCCTACATTTCAGGGAATGCTAACAGCAGCATGATGAGCAGCAACGGCACGAAGTACCCTCATCCAGGGCATACTTCTTTCTTTGACAAAGG
Seq C2 exon
GCGTGAAAAGGTGATATTCCCCACCTTGGTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001163-'21-12,'21-10,23-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.301 A=0.471 C2=0.000
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(15.9=100)
A:
PF048808=NUDE_C=FE(26.5=100)
C2:
PF048808=NUDE_C=PD(4.2=61.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCCTCTTACTCCTTCAGC
R:
CCATGACCAAGGTGGGGAATA
Band lengths:
106-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]