HsaEX0042211 @ hg38
Exon Skipping
Gene
ENSG00000166579 | NDEL1
Description
nudE neurodevelopment protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:17620]
Coordinates
chr17:8454796-8468160:+
Coord C1 exon
chr17:8454796-8454887
Coord A exon
chr17:8460009-8460160
Coord C2 exon
chr17:8466930-8468160
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTCCTCCTTCTTTTTTGTAGGCT
3' ss Score
10.13
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CTATACCAAATGGTTTTGGTACCAGTCCACTAACTCCCTCTGCTAGGATATCAGCACTAAACATCGTGGGGGATCTCTTACGGAAAGTAGGG
Seq A exon
GCTTTAGAATCCAAATTAGCAGCTTGCAGGAATTTTGCAAAGGACCAAGCATCACGAAAATCCTATATTTCAGGGAATGTTAACTGTGGGGTGCTGAATGGCAATGGCACAAAGTTCTCTCGATCAGGGCATACATCTTTCTTCGACAAAGG
Seq C2 exon
GGCAGTAAACGGCTTTGACCCCGCTCCTCCTCCTCCTGGTCTGGGCTCCTCGCGTCCATCGTCAGCGCCGGGTATGCTGCCTCTCAGTGTGTGAGTGCCTAGCCTCCAGGTGGGGGCTCCTGCCCTCCTCCAACAACCCAGGACACCCACGCCTCACCCCTCGGTGCCTGGGCCCAGCCCCGTGCCCCTCCGTCTGCCTCCGCACGGCTGGCAGAGGGCAGGCTGCATGCAGTGGCGGCTACTGGGCCCTGCCCAGCCCCGGAACTCTGCGCGATATCAATACTGGCTATTTTCTCTTCTCGCCGTAGTGCCGTTGGTTTCACATGATTGCACTTTTGTGGGTCGCAAGGTGATACATACGTGTATTACTTGGTCACTGGATGCAGAAGTACCCATTCATCACACCTGCCCCATAGCCCCCACTCTGCTGTACTGATAGGATTTAGTTGTGTTTTAGGACATTGCAAATCTTCTAGAAGTTCTCCCCCAAATCAGGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166579-'34-46,'34-34,37-46
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.029 C2=0.777
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=PD(22.5=93.5)
A:
PF048808=NUDE_C=FE(24.8=100)
C2:
PF048808=NUDE_C=PD(10.4=65.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGGGGATCTCTTACGGAA
R:
CATGCAGCCTGCCCTCTG
Band lengths:
257-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development