MmuEX6086436 @ mm9
Exon Skipping
Gene
ENSMUSG00000018736 | Ndel1
Description
nuclear distribution gene E-like homolog 1 (A. nidulans) [Source:MGI Symbol;Acc:MGI:1932915]
Coordinates
chr11:68639672-68646947:-
Coord C1 exon
chr11:68646856-68646947
Coord A exon
chr11:68643417-68643568
Coord C2 exon
chr11:68639672-68639706
Length
152 bp
Sequences
Splice sites
3' ss Seq
CATTCCTTCTTTCTTTGTAGGCT
3' ss Score
11.18
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CTATACCAAACGGCTTTGGAACCAGTCCACTAACTCCTTCTGCTAGGATATCAGCACTAAACATCGTGGGAGATCTCTTGCGGAAAGTAGGG
Seq A exon
GCTTTAGAATCCAAGTTAGCCGCTTGCAGGAACTTTGCAAAAGACCAAGCATCCCGCAAATCTTATGTTCCAGGGAGCGTTAACTGTGGGGTAATGAACAGCAATGGCCCAGAGTGCCCAAGGTCAGGGCGAGCAACTTTCTTCCATAAAGG
Seq C2 exon
GCAAGAAAAAGTCATATTTCCCACGTTGTTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018736-'14-13,'14-12,15-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=0.240 C2=0.000
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(14.9=100)
A:
PF048808=NUDE_C=FE(24.8=100)
C2:
PF048808=NUDE_C=PD(5.2=76.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACGGCTTTGGAACCAGTC
R:
TGAACAACGTGGGAAATATGACT
Band lengths:
118-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: