RnoEX0058763 @ rn6
Exon Skipping
Gene
ENSRNOG00000004139 | Ndel1
Description
nudE neurodevelopment protein 1-like 1 [Source:RGD Symbol;Acc:621235]
Coordinates
chr10:55411901-55423434:-
Coord C1 exon
chr10:55423343-55423434
Coord A exon
chr10:55419844-55419995
Coord C2 exon
chr10:55411901-55413110
Length
152 bp
Sequences
Splice sites
3' ss Seq
CATTCCTTCTTTCTTTGTAGGCT
3' ss Score
11.18
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CTATACCAAATGGCTTTGGAACCAGTCCACTAACTCCTTCTGCTAGGATATCAGCACTAAACATCGTGGGAGATCTCTTGCGGAAAGTAGGG
Seq A exon
GCTTTAGAATCCAAGTTAGCAGCTTGCAGGAACTTTGCAAAAGACCAAGCATCCCGAAAATCCTATGTTCCAGGGAGCGTTAACTGTGGGGTAATGAACAGCAACGGTCCAGAGTGCCCAAGGTCAGGGCGTGCAACTTTCTTCCATAAAGG
Seq C2 exon
GGCAGTAAACGGCTTTGATCCAGCTCCTCCTCCTCCTGGGCTGGGCTCCTCACGCCCATCGTCAGCACCGGGTATGCTGCCTCTCAGTGTGTGAGTGCCCGGCCTCCAGGTGGGGCCCCTGCCCTCTTCCAGCAGCCCAGGACACCTACGCCTCGTCCCTCGGTGCCTGGGTCCAGCCCTGTGCCCCTCTGTCTGCCTCTTCACCGCTGGCAGAGGGCAGGCTGCATGCAGTGGCCGCTGCTGGGCCCTGCCCAGCCCCAGGACTCTGCGCGATATCAATACTGGCTATTTTCTCTTCTCGCCGTAGTGCCGTTGGTTTCACATGATTGCACTTTTGTGGGTCCCAAGTGATACACACATACATACGTGTGTTTCTCGATCACTGGATGTGGAAGCACCCGTTCATCACATCTGCCTCATAGCCCCCATATTGCTGTGCTGATAGGATTTAGTTGTGTTTAGGACATTGCAGATCTTCTAGAAGTTTCCCTCAATCAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004139-'17-18,'17-13,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.235 C2=0.947
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(14.9=100)
A:
PF048808=NUDE_C=FE(24.8=100)
C2:
PF048808=NUDE_C=PD(10.4=65.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTGGGAGATCTCTTGCG
R:
CTCTGCCAGCGGTGAAGAG
Band lengths:
246-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]