MmuEX6086436 @ mm10
Exon Skipping
Gene
ENSMUSG00000018736 | Ndel1
Description
nudE neurodevelopment protein 1 like 1 [Source:MGI Symbol;Acc:MGI:1932915]
Coordinates
chr11:68826170-68833445:-
Coord C1 exon
chr11:68833354-68833445
Coord A exon
chr11:68829915-68829993
Coord C2 exon
chr11:68826170-68826204
Length
79 bp
Sequences
Splice sites
3' ss Seq
CCGCAAATCTTATGTTCCAGGGA
3' ss Score
6.73
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CTATACCAAACGGCTTTGGAACCAGTCCACTAACTCCTTCTGCTAGGATATCAGCACTAAACATCGTGGGAGATCTCTTGCGGAAAGTAGGG
Seq A exon
GGAGCGTTAACTGTGGGGTAATGAACAGCAATGGCCCAGAGTGCCCAAGGTCAGGGCGAGCAACTTTCTTCCATAAAGG
Seq C2 exon
GCAAGAAAAAGTCATATTTCCCACGTTGTTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018736-'24-21,'24-20,25-21
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=0.235 C2=0.000
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(14.9=100)
A:
PF048808=NUDE_C=FE(24.8=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACGGCTTTGGAACCAGTC
R:
CATGAACAACGTGGGAAATATGACT
Band lengths:
120-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types