DreINT0099889 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24956837-24957449:-
Coord C1 exon
chr11:24957359-24957449
Coord A exon
chr11:24957227-24957358
Coord C2 exon
chr11:24956837-24957226
Length
132 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGT
5' ss Score
8.4
3' ss Seq
ATCTTCCACTGTGTTTTAAGGCT
3' ss Score
6.84
Exon sequences
Seq C1 exon
GAAAGATTTTGAAATGAACCAGATCAGTTCAAAAATCGAAGATGACCAAGTGCTAATCATCCAGCTTCAAAAGAAGATCAAGGAACTGCAA
Seq A exon
GTACGTCCAACTAGACCAAATATATATATATATATATATATATATATATATATATATATATATGTATGTATATGTATGTATGTGTCTCTTCATAAGAACATATTATTGTTTAATCTTCCACTGTGTTTTAAG
Seq C2 exon
GCTCGTATTGAGGAGCTTGAAGAGGAAATGGAAGCAGAGCGCTCTACCCGAGCCAAAATGGAGAAACATCGAAGCGATTCGTCCAAAGAGCTTGAAGAGCTCAGTGAGCGTCTCGAAGAAGCCGGAGGAGCCACATCGGCCCAAATTGAGATGAATAAGAAACGAGAGGCCGACTTTTTAAAACTACGCCGTGACCTTGAGGAGGCCATACTGCACCATGAGGCCATGACTGCCGCATTGCGCAAAAAGCATGCAGACAGCGTGGTTGAACTGAGTGAGCAGATTGACAGCCTTCAGCGAGTCAAACAGAAGCTGGAGAAGGAGAGAAGTGAGGCCAAGATGGAGGCCGATGACCTCACCTCCAATTTAGAGCAGCTGGCAAAGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=0.715
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(15.0=100),PF059116=DUF869=PU(31.4=36.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAAGTGCTAATCATCCAGC
R:
CTCAAGGTCACGGCGTAGTTT
Band lengths:
250-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]