GgaINT0010718 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2947979-2948617:-
Coord C1 exon
chr20:2948527-2948617
Coord A exon
chr20:2948369-2948526
Coord C2 exon
chr20:2947979-2948368
Length
158 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CCCCATCCTGTCCCTTCTAGGCT
3' ss Score
10.51
Exon sequences
Seq C1 exon
GAAGGACTTTGAAATGAGTCAGCTGAACTCAAGGATTGAGGATCAGCAGGTGACTGAGGCCCAGCTGCAGAAGAAGATCAAGGAGCTCCAG
Seq A exon
GTATGGTTGGAAGTTTTGTTCTCATAGCCCTGAGGTCCCAAATTCCCATCAGAGGTAATGTGCTGGGGGCATCTGCATGGGTTGGCCCGTTGTGGGGAGCAAAGATGCTGGAACTTCAGCCAGTGCTTGGAGCATCTGCCCCATCCTGTCCCTTCTAG
Seq C2 exon
GCTCGTATTGAGGAGCTGGAGGAGGAGCTGGAGGCTGAGCGTGCCGCTCGAGCCAAGGTGGAGAAGCAGCGGGCAGAAGTGTCCCGGGAGCTGGAGGAGCTGAGCGAGCGGCTGGAGGAGGCTGGAGGAGCGACGTCTGCACAGCTGGAGATGAACAAGAAGCGGGAGGTGGAATTCCTGAAGCTGAGGAGGGACCTGGAGGAGGCGACGCTGCAGCACGAGTCCACGGCGGCCGCTCTGCGGAAGAAACACGCGGACAGCGTGGCTGAGCTGAGCGAGCAGATCGACAACCTGCAGCGTGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGATGAAGATGGAGGTGGACGACCTGTCATCCAACATCGAATACCTCACCAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=NA C2=0.623
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(15.0=100),PF041569=IncA=PU(53.7=50.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTGAGGATCAGCAGGTGA
R:
GTCCCTCCTCAGCTTCAGGAA
Band lengths:
255-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]