GgaINT0010718 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2592186-2592824:-
Coord C1 exon
chr20:2592734-2592824
Coord A exon
chr20:2592576-2592733
Coord C2 exon
chr20:2592186-2592575
Length
158 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CCCCATCCTGTCCCTTCTAGGCT
3' ss Score
10.51
Exon sequences
Seq C1 exon
GAAGGACTTTGAAATGAGTCAGCTGAACTCAAGGATTGAGGATCAGCAGGTGACTGAGGCCCAGCTGCAGAAGAAGATCAAGGAGCTCCAG
Seq A exon
GTATGGTTGGAAGTTTTGTTCTCATAGCCCTGAGGTCCCAAATTCCCATCAGAGGTAATGTGCTGGGGGCATCTGCATGGGTTGGCCCGTTGTGGGGAGCAAAGATGCTGGAACTTCAGCCAGTGCTTGGAGCATCTGCCCCATCCTGTCCCTTCTAG
Seq C2 exon
GCTCGTATTGAGGAGCTGGAGGAGGAGCTGGAGGCTGAGCGTGCCGCTCGAGCCAAGGTGGAGAAGCAGCGGGCAGAAGTGTCCCGGGAGCTGGAGGAGCTGAGCGAGCGGCTGGAGGAGGCTGGAGGAGCGACGTCTGCACAGCTGGAGATGAACAAGAAGCGGGAGGTGGAATTCCTGAAGCTGAGGAGGGACCTGGAGGAGGCGACGCTGCAGCACGAGTCCACGGCGGCCGCTCTGCGGAAGAAACACGCGGACAGCGTGGCTGAGCTGAGCGAGCAGATCGACAACCTGCAGCGTGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGATGAAGATGGAGGTGGACGACCTGTCATCCAACATCGAATACCTCACCAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=NA C2=0.581
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(12.7=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(52.7=98.6),PF0076914=ERM=PU(46.6=97.1),PF071068=TBPIP=PU(50.5=74.3),PF041569=IncA=PU(58.3=90.0),PF078886=CALCOCO1=PU(43.6=62.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTGAGGATCAGCAGGTGA
R:
GTCCCTCCTCAGCTTCAGGAA
Band lengths:
255-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]