RnoINT0096567 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151145346-151145907:+
Coord C1 exon
chr3:151145346-151145436
Coord A exon
chr3:151145437-151145517
Coord C2 exon
chr3:151145518-151145907
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
ACTCGGTACCATTTACTCAGGCG
3' ss Score
3.77
Exon sequences
Seq C1 exon
GAAGGATTCAGAGCTGAGTCAGCTGAGCCTGCGGGTGGAGGATGAGCAGCTCCTGGGGGCGCAGTTGCAGAAGAAGATCAAGGAGCTACAG
Seq A exon
GTATGCACCGCGGCAGTGGGGACTGCCATGGGTGGCCCAGGCCTGCTCCAGGGGCTCACGGACTCGGTACCATTTACTCAG
Seq C2 exon
GCGAGGGCTGAGGAGCTGGAGGAGGAGCTGGAGGCGGAGCGAGCAGCCCGTGCCCGTGTGGAAAAGCAGCGAGCTGAGGCAGCCCGAGAGCTGGAGGAGCTGAGTGAGAGGCTAGAGGAGGCTGGTGGAGCCTCTGCCGGGCAGCGTGAGGGTTGCCGCAAGCGTGAGGCTGAGTTGGGCCGACTGCGGCGGGAGCTGGAGGAGACAGTTCTGAGACACGAGGCCACTGTGGCTGCCCTGCGCCGCAAGCAGGCTGATAGCGCCGCAGAGTTGAGCGAGCAGGTAGACAGCCTCCAGCGGATCCGGCAGAAACTGGAGAAGGAAAAGAGTGAGCTGCGCATGGAGGTGGATGATCTGGGGGCCAGCGTGGAAACTCTGGCCCGTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.546
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGATGAGCAGCTCCTG
R:
GCCTCCTCTAGCCTCTCACTC
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]