DreINT0099924 @ danRer10
Intron Retention
Gene
ENSDARG00000035322 | myh7bb
Description
myosin, heavy chain 7B, cardiac muscle, beta b [Source:ZFIN;Acc:ZDB-GENE-090311-5]
Coordinates
chr23:18806850-18811497:+
Coord C1 exon
chr23:18806850-18806986
Coord A exon
chr23:18806987-18811241
Coord C2 exon
chr23:18811242-18811497
Length
4255 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGT
5' ss Score
6.97
3' ss Seq
ATCTGATTATTTTTACTCAGGGA
3' ss Score
6.06
Exon sequences
Seq C1 exon
GTCTTCTTCAAAGCTGGACTACTTGGACAGCTGGAGGACATGAGGGATGAACGGCTTTCTAAAGTGCTCACCTTGTTGCAGGCCTTCTGCAGGGGCAAACTCATGCGGATGGAGCGCAAGAGGATGATGAAGGAGAA
Seq A exon
GTATGTCCAAACCATGACAATATCTAAATAACTTTACACAAATAGTTTTGCTGTTACTCACAATCTCAAGAGTCAGATTGCAGATCTAATTTCCTTGAGCCTGTTCAAAGCATGCTGATAAACTGTTGAGCGCGTGCACGGGCATACGAGCCTGCAAATCTATGGGAGGAATGTCAGAAGTGTATGTGGACTATGTTGTGGCGTGTGTCTGGCGTGCGTCTGTATGTTTTGTGTGTATGTGTGGTCACTACAAAAAAAGCCAGTTAAACCCCCTCCGCCCCAAATAGCATTTACAAAAGCAGGTGTGGAGGTCATATATCCCACAAACAGCGCACATACCAGTTGGTTCCTTACCAGAGTCCCTCCTCCCGTCTTCACTATAAATAACCTTCTTTTGTCCAGAATGGATAGGGCTGGAAGCAGGCTGAAAGTTGTTGAAATGCCATCCCAGGTGACAGGGGATTAAGTCCTCTTGTTTCTTCAGATGGGTTCAGCTTTAGATAATCAACAACCTCTGCCTGACCCTTTGACTGTTCCTGATTGTGTTGCCGCTCCAGCAATGCGGAATTGATTTACTCTTTAGGCATGTTCAGTGTCACAGTGGGATTACTGATATAGAACACACCAAACAATGGCGTGTGGCAGCCTGGCCCTATTTGGTGCTAGACATACTGAGCTAATTTAGAACAACAAGGGCAGAGAGCAAAATGGACAAGGGATCTTTGATGCACTTAAAAGGCAAAATTTTGAAGGAGTTTTGAGAGAGTGGGAAAGCGTTCTTTTTGATCCGCTTGATTATATTCTGTTGGAATATTTTTACCTGATGATCAAGTTAGGGCGGCGCAGTGGGTAAAGCCTAGGCTTGTTTAAGCCTAGGCTGGGTCAGTTGGCATTTCTGTGTGCAGTTTGCATACTCGCCCCTGTGTTGGCGTGGGCTTCCTCCAGGTGCTCCGGTTTCCCCTACAAGACCAATGACATGCGCTATATTTGAATTGGGTAAGCTAAATTGTCAGTAGTGTGTGTGTGTGTATGTGTGAATAAGAGTGTATGGGTGTTTCCCAGTGATGGGATGCAGCTTTAAGGGCATCCACTGTATAAAACATGCTGGATAGGTTGGCTGTTCATTCCACTGTGGCGACCCCAGATTAATAAAGGGACGAAGGAAAATTAATGATTGAATGATTAAGACGCATAAACAATTTGTAAATGGAGGCAACAATCATACCTGCCAACACTCACAATTTTCCCTGGGAGTCTACCGTATTTCAGACCCATCTCTTGCCGCCCTCCCGTTTTGCTATTTCTCCCGGAAAACTCACGTAATTTTAAACCGCACCCCCCGGTCCAATCGCATCGGCCACCTGAAACACGAACTATAGTACAGTTACTAACACCACAGTACACAGTACCCGGTTCTGAACCGTGTTATTCAGACACCTCACCCCCAGATTTTCAGGGACAAATGTTGGCAGGTATGGCAGCTGTTATATTTTACTTTGTTTATTTTGTATCACCTAAGAATGTAAATAAAAAGCTATACAAAGTAATTATTTAACACGTGGGAATCATGACCTTTTGAATAATAATATTGACTAGATTAACAAATGTAAAAAATGTAAAAACCGGAAGCCCGCAGTGCAAACTACTTTATTGAACGTTGATTATAAGTTTCTCAAAACCAACATCAACAGGATGTACATTTCTGAAAACTAGTCAAATGTATATCAACCTTATCTTTGGCTGCATACATACTATAAAGTGGAACAATTAAAGCACACTGTGTTGCCATGTCCTTGTAAAAGACATTTATTTTGTTTATTTGGGCATGTTTGGAATTGACCTCATAAAACCAATTCAGTTTAGGAAGTTAATAAAACATGTAGCATTTGGTTTATGACATGTCCCCAAAAAGTATTTGGGATAAAATTTTCTTTCACCTTATGATTTGAATAATTTTTCCAATCCAAGATTTGGCAACACAATTATTTTGCATCTCTGCAACTCTGATGCTTTAAAATCCACCATGAACAACTAGTTAAAGAGCCCCTATTATACATTGTAAAAGGTCATATTTTGGTTTTGGGGGTCTCCAACAACAGACTGATATGCATGCAAGGTCAAAAAAAACACTTTTAATAGCCCCTTTCACACAGTGATACCGGTAAATATCTGGAAAATTTCCGGAAAGACTTTACCGGTATATTGAAAAAAGCGCTGTTTACACAGGCGAGGACGTTACGGAAATTTTCCGGAAAAGAGCATTCACACATCCATTCCAAAATACCGGTAAATTCTGACATCATTCACCACAAATGAGCTTTAAACGGCTGCGCTTGTATTTGTAAACATTTGATTAAATTACAAACTTTGTGGATGATCAATATTGTGAACAACTTTCGCAGGATCGAGATGTTCATAATATGTGCGTGTGCTGGCGCTCATAGGCGCACGCAAAGCTTGAAGGTAAACAAACAACGGCTTATCATAAGCATCTCATCGATGATTATTTACACAGTTGGCATCAAGAAGAACATATAAACGTGATCTGACTAACTTCTAGCAGCTAAATGTGTCTGGAAAAATATTCAAAGGCTTTTATCCTCACAAACCACGCGGACGTAAATGCGTCTGACTGTTTTGATTGGCTAAAGCAGACGTCTCACGTCAGCACGTTCTAGACGTGCACGCGCTTATTACGGGAATCTTCCTTCTGCATTCACACAGCGCAGCATTCCGGCAAATTGCCGGTAATGTTACAACTTCTCTTTCCGGAAAAAAGCCAGAACGAATTTACCGGTATTTTCAAAAAGGACCTGTTCACACATACAACCTTTCCGGAAAATTGCCGGCAATTTTCCGGAAAGGTCTGTATGTGTGAAAGGGGCTATTGTCTTGTAATTGGCATTTATTTTTACGTAGTTATCCCAGCGGCTCGTTCAGTATGATTTGTTCAGTGATTAATTTGTTCCCAAACCCCTCCTTAGAGCGATGCTAATCTGCACTGATCCGATGACCAAGTCTGTTGTGATTAGTCGACTGCATTTAGTGTGAGAAAGAGAGAAATGCCCACCACGGCTTATCAACAATTTTGAAGTAGTCAGAGTACAGAGTGTAGGTGTGAGCCCAATGCAGGAGTGCATTAAAGCAATGCAGTTTAATGCACGTGTGTAGGAACAGCTGATGGTGGCCATAGCATCGACAAACGGCAAGGGATCGCCAGCTCACAAATGCATTTAAATCCGTAAACAAAGCGGCACTCGTCGCATTTTCAACGTGGTTTTAGCTGCGATATGAAATTGTAAAGAGTTAACCAGATACACTACAAGCGGTAACAAGTAACAAAACACAATTCAATACATCATTTGCAAGCTAGAAAAAACAAGGAGGCAACCATTTTAATCATATTTACTTACACTTGTGAAATGGAGGAAGGAACTGATCCATGAACTATGTACTGTAAAGTTCCTGTCAAGCTCTCATTCAAGCTCAATTCATCAATAGTCTTTTCTGATCCTTCCTTTAACAAACAGCCGATAAATCCTCCGTAGAAAGCGTGTAGATTGCTGAAGCACTCGTCAGAAAAATGACAAAAACGCAGTACAAGGCTGGGGCTATAATGCTGAGGTATTTTTGCAAAAATAAACTTTAACCATTGACTCTTTACAGCCTTGTCTTTAAATAGGGAAAATAACACTAATTTTCTTTCACACTTCAGAGCACAGCGTCTACACAACCGGGATCTGCTACAGTGTTTTTCTTTATCTTCTTCTTTCTACAGTGTTTGTGGGCAGGGCCAGGGGTTTCAATTTTCCCGGGTCTGCACGCGCAACAAATGGGCGGGGCTTAAGTTCTATATCGACATCACAGCAACACGGCTAAAGACTCGTTACAACGGCGATATATTCGAACCACTATGGGTGGGCTCTTATATTGATGAAACAAAAGTTTTAAACACAGTTCACTTTCAGACTTAAACATCACCTGGATACTTCACTTCACTTAGAGCTGTACTACACACTGCATGGAAGGTCATATTCAAAAACCCGTTATAGGGGCTCTTTAATGCTCATTATTTGTAAATACATGTTGCTACTCGAATGATTTTTACTGTTAATTTGGTTGTACTACTGTCAAAAATGACTTAACTGTGTGGACCACACAGAAGTTGGCACTAAAAGATGAAACGACAACTGACGTTGTATGTGATAGTCACTGTAGTATGCCGCTTATCCATCATCTGATTATTTTTACTCAG
Seq C2 exon
GGAAGCTCTAATGGTGATTCAATGGAACATTCGGGCCTTTTATGCAGTGAAGAACTGGCCGTGGATGTGTCTGTTCTTCAAGATCAAGCCACTGTTGAGGAGCGCAGCTACAGAAAAGGAGCTTGCAACACTGAAGGAGGAGTTTCAGAAGCTAAAGGAGGCTCTGGAGAGATCTGAGGTGAAGAGGAAGGAGTTAGAGGAGAAACAGGTGTCTTTGGTACAAGAGAAAAATGACCTGTCATTACAACTTCAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035322:ENSDART00000137438:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.8=6.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(26.3=60.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]