HsaINT0107893 @ hg19
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:15906]
Coordinates
chr20:33581137-33582204:+
Coord C1 exon
chr20:33581137-33581273
Coord A exon
chr20:33581274-33581948
Coord C2 exon
chr20:33581949-33582204
Length
675 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GCTTGGCTGCCCCTCCCTAGGGA
3' ss Score
8.12
Exon sequences
Seq C1 exon
GTGTTCTTCAAGGCTGGGCTTCTAGGCGTCCTGGAAGAGCTCCGTGACCAGCGCCTGGCCAAGGTGCTGACGCTGCTGCAGGCGCGGAGCCGTGGCCGCCTCATGCGCCTTGAGTACCAGCGCCTGCTGGGAGGCAG
Seq A exon
GTGGGTGTGGGAAGGAGGCTGGGGACAGGGTGTGTCCCCTGCCTCTCAGCTCCCAGACCCACTGGCTCTCCCAACCCTAACATGCTGCCCTGTAGTCAGATCAGCCCCTGTGGCTGGTTGGGGCAAGGTTCTGTTCTGTGTCCCCCAGCCTCCATTTCCCCACCTCAAAAAACGGGGTACGGCACTTGCCTCTCCATTTCAGGACATCAGCGTGTGGCCCGGAGGGGTAGCGATGGCACCCAGTGTCTTCCAAGACTCTTGCGGGCCGGGCCCCAGGCAAGATACTTTCTCTGCATTATCCTGGTTAAAGCGCTGACGGTCCTGAGAAACAGGCGCTGTGATGGCCTCCACTCAGCAGAAGGGTGCCCGTGTCAGAGATCCAGAGCTAGCTGGCACGTCAGCCCAGGCCGCTGACTCCAGAGCCCCGTGGCTTAACAGCCCTGGTGTCTTCCGGGAATTGCAGAGGCCACCAGGACATGGGGGGCTCATGAGCCCCTTCACTGGAGGCAGGCCTGTGGGACTGTGGGCCTCCCCTCACCCTCACCTATAAAGCAGAGCTATTAGGAGCTACTCCATGAGGCTGCTGGGAAGGCAAAACAAGTGAACTGTGCTGAGTGTCACCATTTGTGACGGGCAGCACTGAGCCACCTTCACAGCTTGGCTGCCCCTCCCTAG
Seq C2 exon
GGATGCGCTGTTCACCATCCAGTGGAACATCCGTGCCTTCAATGCCGTCAAGAACTGGTCATGGATGAAGCTCTTTTTCAAGATGAAGCCGCTGCTGCGCTCGGCGCAGGCTGAGGAGGAGCTGGCGGCCCTGCGGGCAGAGCTGCGGGGGTTGCGAGGGGCGCTGGCTGCGGCCGAGGCCAAGCGCCAGGAACTGGAGGAGACGCACGTCAGCATCACCCAGGAGAAGAATGACCTGGCCCTGCAGCTGCAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814-MYH7B:NM_020884:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(24.0=62.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAGGCGTCCTGGAAGAGC
R:
TCTTCTCCTGGGTGATGCTGA
Band lengths:
348-1023
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)