RnoINT0096562 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151141977-151143091:+
Coord C1 exon
chr3:151141977-151142113
Coord A exon
chr3:151142114-151142835
Coord C2 exon
chr3:151142836-151143091
Length
722 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
3' ss Seq
CAGGAACTGTCTCTCCCTAGGGA
3' ss Score
9.1
Exon sequences
Seq C1 exon
GTGTTCTTCAAGGCTGGGCTTCTAGGCATCCTGGAGGAGCTCCGGGACCAGCGTCTGGCTAAGGTGCTGACACTGCTGCAGGCTCGGAGCCGGGGCCGCCTCATGCGTCTGGAGTACCAGCGCATGCTAGGAGGAAG
Seq A exon
GTAGCTGCGGGCGAGGGATGGGCAGCGAGGGTGGGAAGAGATGGGGACTAGACGTGACCACTGTCTCAAGGCTTGATGGCAACCCAACCCTGCCATGCTGCCTGGGTTGCTCCCCCTCCATGGCTGGTTGGGGTGAGGTTCTGGGTCTTGTCACCTAGCCTCAGATTTTACACTTCAACATCGGGGTGAGGGCCAGACTCATGGCTCAGTAGGTAAAGTTACCTGCTGCCCTACCCAATGACTTAAGGGACCTACATGGTGGAGAGAGATATCTGACCTCCACATACATGTCTTCTGACCTCCACGTATGTGCGTACACATGAACATTCACACACACACTAAAATTAACATGTTTTTAAAAGTTAGGGTGAGAGTAGCCTCTGTCCTCTGCATATCCAGAGCATGGCCTGGAGAGTAACAGCATTCAGTGCTGCCCAGACTCTGAACCATGATCCGATTTATCACTCTCTTGGTTAAAACAGAAGACAGCCCTCTCGGGTGGGTATGCTCAGCAGAGGGCCTGAGTCAGGCAGTCTGCCCACAGGCCTGGTAGCTAAGTTGTCCTCAGACACTTGCAGAAGCCACCCTGGGCGTTTGGAGGTGAATCTGGGGCTGCTCCCAGACTCCCCTGCTCTGGAGAGCTGCTAGGAAGTCTGTGGAGAGAGGACACAGAGCCTTGAAGGGGCAGAGCCAGCCGCCTCACAGGAACTGTCTCTCCCTAG
Seq C2 exon
GGATGCCCTGTTCACCATCCAGTGGAACATCCGGGCCTTCAATGCCGTCAAGAACTGGTCCTGGATGAAGCTCTTCTTCAAGATGAAGCCACTGCTGCGCTCAGCACAGGCAGAGGAAGAGCTGGCAGCACTTCGGGCAGAACTGCGGGGGCTGCGGGGGGCCCTGGCTACGGCTGAGGCCAAGCGTCAGGAGCTGGAGGAGACTCAAGTCAGTGTCACTCAGGAGAAGAATGACCTGGCCCTGCAGCTGCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(22.9=61.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTTCAAGGCTGGGCTT
R:
ACTTGAGTCTCCTCCAGCTCC
Band lengths:
347-1069
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]