GgaINT0010713 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2951039-2952206:-
Coord C1 exon
chr20:2952070-2952206
Coord A exon
chr20:2951295-2952069
Coord C2 exon
chr20:2951039-2951294
Length
775 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
3' ss Seq
TTGTGCTTGTATCCCTGCAGGGA
3' ss Score
10.72
Exon sequences
Seq C1 exon
GTGTTTTTCAAGGCTGGTTTGCTGGGCATGCTGGAAGAGATGCGAGATGAACGTCTGGCCAAGATTCTGACCATGCTGCAGGCCAGGATCCGTGGGCACCTCATGCGCATTGAGTATCAGAAGATCATCAGCAGGAG
Seq A exon
GTAGAGCTGTGGGGGGAGAAAGAGTTTTGCAAGTGCTTCTTTTTTCCTCTGTGCATTTCAGTGGGTTTGGTTTGTAGGGCTTTCCTGTGGCTGGCAGAGGATGTGCACGTGTCCTGGTTTCAGCTGGGACAGAGTTGATTTTTCCTTTATAGTGTCTGTTCTGATGCTGTGTTTTGTCTTTAGGGAAAAAAATAATGTTGTTAACACACTGATGTATTAATTGTTGCTGAGCAGTGCTGTGCAGAGCCAAGGGAGAGTGGGCGAATGACTGTGTGGTGCTCAGCTACCTGCCAGGTTAAACCACAACAGCATGGAAGGGATGGAGGCAAACCTGCAGGGCCTGGCATATATTTGACAGGAAGAGCCGATGTATCTGGGCTGGGGAAGTGTTTGGTTTCCGCTGGAAGGATTCAGTGGATGCAGAGGGAGGAGATCTGAGTGCCATACCACCAATTCCACCAGTGCCACTGCAGTGTGATTGTTCATATAACATACAGGTTGCCCAAGGAGGCTGTGGATGCCCCATCCCTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGGTGGTTGGCAATCCTGCACACAGAGGGGGTTGAAACTAGATGATAATTGTGGTCCTTTTCAACCCAGGCCATTCTGTGATTCTATGATACTGCCATTTGTCCTGCTGGTGGAGAATGGAGTCAGGTTTCTGCTGCAGTTGGGAGTTGGAGGTGGGGCATCTAGACCCATGATGATCCTTGTGCTTGTATCCCTGCAG
Seq C2 exon
GGAAGCCCTCTATACCATCCAGTGGAACATCCGAGCCTTCAATGCTGTTAAGAACTGGTCCTGGATGAAACTGTTCTTCAAGATCAAGCCTTTGCTGAAGTCTGCTCAGACTGAGAAGGAAATGTCCACCTTGAAGGAAGAGTTCCAGAAGCTGAAGGAGGCTCTGGAGAAGTCGGAGGCTAAGAGGAAGGAGCTGGAAGAGAAGCAGGTCTCCATGATCCAGGAGAAGAATGACCTGGCTCTCCAGCTACAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.6=6.5),PF0061222=IQ=WD(100=45.7)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.1=60.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAAGGCTGGTTTGCTGGG
R:
AGACCTGCTTCTCTTCCAGCT
Band lengths:
344-1119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]