DreINT0100000 @ danRer10
Intron Retention
Gene
ENSDARG00000001014 | myh9b
Description
myosin, heavy chain 9b, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-998]
Coordinates
chr3:5236045-5237768:-
Coord C1 exon
chr3:5237608-5237768
Coord A exon
chr3:5236154-5237607
Coord C2 exon
chr3:5236045-5236153
Length
1454 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TGTGTGTGTGTGTCCTGCAGAGC
3' ss Score
11.47
Exon sequences
Seq C1 exon
ATCCGAGCTCTGGAGCTGGACCCTAACCTGTACCGCATCGGTCAGAGTAAAGTGTTTTTCCGCGCCGGAGTTCTGGCCCACCTGGAGGAGGAGCGGGACATGAAGATCACCGACGTCATCATCAACTTCCAGGCCTGGTGCCGGGGATACGTCGCCCGCAA
Seq A exon
GTGAGTTTTGCTGGAGTTCACTGGTAGACAGTGAATTCAATTGAACTGAATTGTTTCGACGGCTTTTAAAAAAAGCCCTTAATTGCTTTTCCATTATTTAAGGCTTTAAAGGTTCTTTGAATTGCGCATTTTTATTTAGCGTTTGAGTTCGTTTAAACTAAAACATAAAGAGAGGGCGGGGCGTAGAGTAGCTCTTCCCCTTTTTAAAACAGCCTATAGCATTTAGTTTCTTTTGGTCTTTTCGACTAAAACATGGAGAGGGCGGGGCATAAAATTACTCCTCCCATTTTTTAAACAGCCTATAGCATGTGTTTCTTTAAGTCATTTCAACTGAAAGATTAAGAGAGGGTGGGGCATAGGGTAGCTCCTCCCCTTTTTTTAAACAGCCTATAGCATTTTGTTTTTTTAGGCTTTTTCAACTGAAACATAAAGATAGTTTGATGCCACATGTGACAGTCACGTGGCGTTGACACAGCATCTATCCGAACAAGATTTCTAACCAGAATGCACCGCTTTAAGACAGATTTCGATCGATCTGCGCAGCACTGCATGAAGTCGAACGCACCTATTTTGTCTCTTTAGGCTTTTTCAACTAAAACATGAAGAGAGGGTGGGGCATAGAGTAGCTCCTCCCCTTTTTTAAACAGCCTATAGCATTTTGTTTCTTTAGGCTTTTTCAACTGAAACATGGAGAGGGTGGGGCATAGAGTAGCTCCTCCCCCTTTTTTAAACAGCCTATAGCATTTTGTTTCTTTAGGCTTTTTCAACTGAAACATGGAGAGGGTGGGGCATAGAGTAGCTCCTCCCCTTTTTTAAACAGCCTATAGCATTTTGTTTCTTTAGGCTTTTTCAACTGAAACATGAAGAGAGGGCGGGGCATAGAGTAGCTCCTCCCCTTCAAAAAACAGCCTATAGCATTTAGTTTTTTTAGGTACAGTAATTTCCCCTTAAACATGGAGAGGGTGTGGCATAGAGTGGCTCCTCCCCTTTAAAAAACTGCCTGTAGCATTTAGTTTTTTTTAGATAATTTCACCTAAAACATTGAGAGGGCAGGGCATAAAGTAGCTCCTCCTATTTTTAAAAAACAGCCTATAGCATTTTGTTTTTTTTAGATAATTTCACCTAAAACATTGAGAGGGCGGGGCATAAAGTAGCTCCTCCTATTTTTAAAAAACAGCCTATAGCATTTTGTTTTTTGAGCATTTCAACTGAAACATGAAGAGAGGGCGGGGCATAAAGTAGCTCCTCCCCTTTAAAAAACAGCCTATAGCATTTTGTTTTTATCACCGCTCTGCAAGTGAGAGGGGTTGAGCTTAGGCACATCAAATGAACAGCCAATGAGAGGAAGGGGGCGGGGCATGTCAGACACTAGAGAGCATTTGATTGGTCGAAAGATTTGATGAGAAACTGAAGTATGCATCTCATGTGTGTGTGTGTGTGTGTGTGTCCTGCAG
Seq C2 exon
AGCATTCGCTAAGAGACAGCAGCAGCTGACAGCCATGCGTGTGATTCAGAGGAACTGTGCTGCTTACCTGAAGCTCAGGAACTGGCAGTGGTGGAGACTCTTCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001014:ENSDART00000137105:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.9=37.0),PF0061222=IQ=PU(81.0=31.5)
A:
NA
C2:
PF0061222=IQ=PD(14.3=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGAGCTGGACCCTAACC
R:
TTAGTGAAGAGTCTCCACCACTG
Band lengths:
262-1716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]