DreINT0100001 @ danRer10
Intron Retention
Gene
ENSDARG00000001014 | myh9b
Description
myosin, heavy chain 9b, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-998]
Coordinates
chr3:5235833-5236153:-
Coord C1 exon
chr3:5236045-5236153
Coord A exon
chr3:5235965-5236044
Coord C2 exon
chr3:5235833-5235964
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
CGCCTGTGTGTGTGTTTCAGGTG
3' ss Score
12.79
Exon sequences
Seq C1 exon
AGCATTCGCTAAGAGACAGCAGCAGCTGACAGCCATGCGTGTGATTCAGAGGAACTGTGCTGCTTACCTGAAGCTCAGGAACTGGCAGTGGTGGAGACTCTTCACTAAG
Seq A exon
GTTTGCACACTCACACACTGTCAGATGACTGTGCTGTGTGTGTGTGTTCGGTACTGATGCCGCCTGTGTGTGTGTTTCAG
Seq C2 exon
GTGAAGCCGCTGCTGCAGGTCAGCCGACAGGAAGAGGAAATGCAGGCCAAAGAGGAGGAGCTGAGTAAAGTGCGGGAGAAGCAGCAGGTGGCGGAGCAGCAGCTGGTGGAGATGGAGGTCAAGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001014:ENSDART00000137105:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.205
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(14.3=8.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(16.5=88.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGCTAAGAGACAGCAGCAG
R:
CGCACTTTACTCAGCTCCTCC
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]