DreINT0100003 @ danRer10
Intron Retention
Gene
ENSDARG00000001014 | myh9b
Description
myosin, heavy chain 9b, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-998]
Coordinates
chr3:5235544-5235964:-
Coord C1 exon
chr3:5235833-5235964
Coord A exon
chr3:5235751-5235832
Coord C2 exon
chr3:5235544-5235750
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTGAATGTTGTTGATTTCAGCTG
3' ss Score
6.75
Exon sequences
Seq C1 exon
GTGAAGCCGCTGCTGCAGGTCAGCCGACAGGAAGAGGAAATGCAGGCCAAAGAGGAGGAGCTGAGTAAAGTGCGGGAGAAGCAGCAGGTGGCGGAGCAGCAGCTGGTGGAGATGGAGGTCAAGCAGCAGCAG
Seq A exon
GTGAGAGAGTCTGACCAGTACTGTACTCCTATTCCTCCTGTGTGATGTGACCGTATGAGTGTGTGAATGTTGTTGATTTCAG
Seq C2 exon
CTGAACGCAGAGAAGATGGCTCTGCAGGAGCAGCTGCAGGCCGAGATGGATCTGTGTGCAGAGGCTGATGAGATGAGGAACCGGCTGGTGGCCAAGAAGCAGGAGCTGGAGGAGATCCTGCACGACCTGGAGGCCCGAGTGGAGGAAGAGGAGGAGAGGGCAAACCACCTGCAGGCTGAGAAGAAGAAGATGCAGCAGAACATCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001014:ENSDART00000137105:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=NA C2=0.435
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(16.5=88.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCAGGCCAAAGAGGAGG
R:
CTCATCAGCCTCTGCACACAG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]